VTR

15 main matches found (37 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.48

VTR = 0.01

Average AVD = 0.43 Å

Parameters

Chains(6ZER.pdb ): D versus F

Chains(6ZER_uk_mut.pdb ) D versus F

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6ZER 1896 22 5 10 0 0 1 38
B6ZER_uk_mut 1896 24 5 13 0 0 1 43

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-F D-F L517 W104 L517 W104 Hydrophobic Hydrophobic 0.6 View
D-F D-F V382 W104 V382 W104 Hydrophobic Hydrophobic 0.41 View
D-F D-F L390 W104 L390 W104 Hydrophobic Hydrophobic 0.78 View
D-F D-F L390 W104 L390 W104 Hydrophobic Hydrophobic 0.79 View
D-F D-F T385 Y59 T385 Y59 Hydrophobic Hydrophobic 0.14 View
D-F D-F T385 Y106 T385 Y106 Hydrogen Bonds Hydrogen Bonds 0.39 View
D-F D-F K386 D99 K386 D99 Attractive Attractive Hydrogen Bonds 0.56 View
D-F D-F F377 Y59 F377 Y59 Hydrophobic Hydrophobic 0.54 View
D-F D-F V382 W104 V382 W104 Hydrophobic Hydrophobic 0.45 View
D-F D-F P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.23 View
D-F D-F K386 D99 K386 D99 Attractive Attractive 0.69 View
D-F D-F S383 Y106 S383 Y106 Hydrogen Bonds Hydrogen Bonds 0.21 View
D-F D-F S383 W104 S383 W104 Hydrogen Bonds Hydrogen Bonds 0.45 View
D-F D-F T385 Y106 T385 Y106 Hydrogen Bonds Hydrogen Bonds 0.23 View
D-F D-F F377 Y59 F377 Y59 Hydrophobic Hydrophobic 0.39 View
D-F D-F P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.21 View
D-F D-F F377 Y59 F377 Y59 Aromatic Stacking Aromatic Stacking 0.26 View
D-F D-F T385 D33 T385 D33 Hydrogen Bonds Hydrogen Bonds 0.34 View
D-F D-F T385 N57 T385 N57 Hydrophobic Hydrophobic 0.15 View
D-F D-F T385 D33 T385 D33 Hydrogen Bonds Hydrogen Bonds 0.35 View
D-F D-F V382 W104 V382 W104 Hydrophobic Hydrophobic 0.4 View
D-F D-F L517 W104 L517 W104 Hydrophobic Hydrophobic 0.63 View
D-F D-F F377 Y59 F377 Y59 Hydrophobic Hydrophobic 0.62 View
D-F D-F K386 D33 K386 D33 Attractive Attractive 0.49 View
D-F D-F L390 W104 L390 W104 Hydrophobic Hydrophobic 0.74 View
D-F D-F P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.21 View
D-F D-F S375 K65 S375 K65 Hydrogen Bonds Hydrogen Bonds 0.29 View
D-F D-F T385 Y59 T385 Y59 Hydrophobic Hydrophobic 0.14 View
D-F D-F F377 Y59 F377 Y59 Hydrophobic Hydrophobic 0.62 View
D-F D-F L390 W104 L390 W104 Hydrophobic Hydrophobic 0.74 View
D-F D-F L390 W104 L390 W104 Hydrophobic Hydrophobic 0.75 View
D-F D-F S383 W104 S383 W104 Hydrogen Bonds Hydrogen Bonds 0.43 View
D-F D-F K378 D62 K378 D62 Attractive Attractive 0.35 View
D-F D-F P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.08 View
D-F D-F S383 V105 S383 V105 Hydrogen Bonds Hydrogen Bonds 0.21 View
D-F D-F F377 Y59 F377 Y59 Hydrophobic Hydrophobic 0.53 View
D-F D-F K386 D33 K386 D33 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.5 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6ZER | 6ZER_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6ZER_uk_mut D-F S383 Y106 Hydrogen Bonds 3.89 View
6ZER_uk_mut D-F P384 Y59 Hydrophobic 4.47 View
6ZER_uk_mut D-F K386 G101 Hydrogen Bonds 3.70 View
6ZER_uk_mut D-F L390 W104 Hydrophobic 4.33 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph