VTR

21 main matches found (25 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.28

VTR = 0.0

Average AVD = 0.26 Å

Parameters

Chains(6ZER.pdb ): D versus C

Chains(6ZER_uk_mut.pdb ) D versus C

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6ZER 1896 4 8 10 0 4 0 26
B6ZER_uk_mut 1896 6 8 11 0 4 0 29

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-D C-D L155 F464 L155 F464 Hydrogen Bonds Hydrogen Bonds 0.04 View
C-D C-D K191 R357 K191 R357 Repulsive Repulsive 0.24 View
C-D C-D N153 E516 N153 E516 Hydrogen Bonds Hydrogen Bonds 0.2 View
C-D C-D D152 R357 D152 R357 Attractive Attractive 0.23 View
C-D C-D D152 R355 D152 R355 Hydrogen Bonds Hydrogen Bonds 0.25 View
C-D C-D L155 E465 L155 E465 Hydrophobic Hydrophobic 0.19 View
C-D C-D D186 R466 D186 R466 Attractive Attractive 0.5 View
C-D C-D D152 R357 D152 R357 Attractive Attractive 0.24 View
C-D C-D K146 K462 K146 K462 Repulsive Repulsive 0.21 View
C-D C-D D152 R357 D152 R357 Attractive Attractive 0.22 View
C-D C-D D186 R466 D186 R466 Attractive Attractive 0.5 View
C-D C-D H190 R355 H190 R355 Repulsive Repulsive 0.21 View
C-D C-D D152 R357 D152 R357 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.2 View
C-D C-D D152 R357 D152 R357 Attractive Attractive 0.31 View
C-D C-D S157 R466 S157 R466 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-D C-D K191 R357 K191 R357 Repulsive Repulsive 0.22 View
C-D C-D D152 R355 D152 R355 Attractive Attractive 0.19 View
C-D C-D N153 Y396 N153 Y396 Hydrophobic Hydrophobic 0.47 View
C-D C-D S157 I468 S157 I468 Hydrogen Bonds Hydrogen Bonds 0.32 View
C-D C-D K189 N354 K189 N354 Hydrogen Bonds Hydrogen Bonds 0.32 View
C-D C-D H190 R355 H190 R355 Hydrogen Bonds Hydrogen Bonds 0.19 View
C-D C-D D152 Y396 D152 Y396 Hydrogen Bonds Hydrogen Bonds 0.26 View
C-D C-D A154 W353 A154 W353 Hydrophobic Hydrophobic 0.22 View
C-D C-D L155 E465 L155 E465 Hydrophobic Hydrophobic 0.21 View
C-D C-D L155 R466 L155 R466 Hydrogen Bonds Hydrogen Bonds 0.26 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6ZER | 6ZER_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6ZER_uk_mut C-D D152 R355 Hydrogen Bonds 3.80 View
6ZER_uk_mut C-D D152 Y396 Hydrophobic 4.23 View
6ZER_uk_mut C-D L155 F464 Hydrophobic 4.37 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph