VTR

11 main matches found (35 matches in total )

Execution time: 28.0 seconds

Match RMSD = 0.72

VTR = 0.02

Average AVD = 0.61 Å

Parameters

Chains(6ZDH.pdb ): C versus G

Chains(6ZDH_uk_mut.pdb ) C versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6ZDH 4308 24 2 9 0 0 0 35
B6ZDH_uk_mut 4305 29 2 10 0 0 0 41

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-G C-G L390 W104 L390 W104 Hydrophobic Hydrophobic 1.05 View
C-G C-G S383 W104 S383 W104 Hydrogen Bonds Hydrogen Bonds 0.32 View
C-G C-G T385 N57 T385 N57 Hydrophobic Hydrophobic 0.39 View
C-G C-G F392 W104 F392 W104 Hydrophobic Hydrophobic 1.43 View
C-G C-G Y369 N57 Y369 N57 Hydrophobic Hydrophobic 0.16 View
C-G C-G F392 W104 F392 W104 Hydrophobic Hydrophobic 0.68 View
C-G C-G K529 D54 K529 D54 Attractive Attractive 0.49 View
C-G C-G D389 Y53 D389 Y53 Hydrogen Bonds Hydrogen Bonds 0.7 View
C-G C-G V382 W104 V382 W104 Hydrophobic Hydrophobic 0.3 View
C-G C-G V382 W104 V382 W104 Hydrophobic Hydrophobic 0.28 View
C-G C-G K386 G101 K386 G101 Hydrogen Bonds Hydrogen Bonds 0.65 View
C-G C-G T385 D33 T385 D33 Hydrogen Bonds Hydrogen Bonds 0.74 View
C-G C-G T385 Y106 T385 Y106 Hydrogen Bonds Hydrogen Bonds 0.42 View
C-G C-G K386 L103 K386 L103 Hydrogen Bonds Hydrogen Bonds 0.67 View
C-G C-G F392 W104 F392 W104 Hydrophobic Hydrophobic 0.51 View
C-G C-G L390 W104 L390 W104 Hydrophobic Hydrophobic 1.0 View
C-G C-G F374 K65 F374 K65 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-G C-G V382 W104 V382 W104 Hydrophobic Hydrophobic 0.3 View
C-G C-G F392 W104 F392 W104 Hydrophobic Hydrophobic 0.68 View
C-G C-G Y369 N57 Y369 N57 Hydrophobic Hydrophobic 0.15 View
C-G C-G K386 D99 K386 D99 Attractive Attractive 0.83 View
C-G C-G L390 W104 L390 W104 Hydrophobic Hydrophobic 0.98 View
C-G C-G L390 W104 L390 W104 Hydrophobic Hydrophobic 1.01 View
C-G C-G P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.2 View
C-G C-G V382 W104 V382 W104 Hydrophobic Hydrophobic 0.22 View
C-G C-G T385 Y59 T385 Y59 Hydrophobic Hydrophobic 0.52 View
C-G C-G T385 Y59 T385 Y59 Hydrophobic Hydrophobic 0.52 View
C-G C-G L390 W104 L390 W104 Hydrophobic Hydrophobic 0.83 View
C-G C-G L390 W104 L390 W104 Hydrophobic Hydrophobic 1.05 View
C-G C-G L390 W104 L390 W104 Hydrophobic Hydrophobic 0.96 View
C-G C-G V382 W104 V382 W104 Hydrophobic Hydrophobic 0.24 View
C-G C-G S383 Y106 S383 Y106 Hydrogen Bonds Hydrogen Bonds 0.29 View
C-G C-G F392 W104 L390 W104 Hydrophobic Hydrophobic 1.79 View
C-G C-G V382 W104 V382 W104 Hydrophobic Hydrophobic 0.28 View
C-G C-G S383 W104 S383 W104 Hydrogen Bonds Hydrogen Bonds 0.51 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6ZDH | 6ZDH_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6ZDH_uk_mut C-G Y369 N57 Hydrophobic 3.95 View
6ZDH_uk_mut C-G Y369 Y59 Hydrophobic 4.46 View
6ZDH_uk_mut C-G V382 W104 Hydrophobic 4.49 View
6ZDH_uk_mut C-G K386 K102 Hydrogen Bonds 3.80 View
6ZDH_uk_mut C-G L390 W104 Hydrophobic 4.40 View
6ZDH_uk_mut C-G L390 W104 Hydrophobic 4.49 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph