VTR

11 main matches found (18 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.32

VTR = 0.0

Average AVD = 0.3 Å

Parameters

Chains(6ZDG.pdb ): E versus G

Chains(6ZDG_uk_mut.pdb ) E versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6ZDG 1884 7 0 7 0 5 0 19
B6ZDG_uk_mut 1884 7 0 8 0 5 0 20

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-G E-G R355 N153 R355 N153 Hydrogen Bonds Hydrogen Bonds 0.34 View
E-G E-G R466 L155 R466 L155 Hydrogen Bonds Hydrogen Bonds 0.15 View
E-G E-G F464 L155 F464 L155 Hydrogen Bonds Hydrogen Bonds 0.15 View
E-G E-G W353 A154 W353 A154 Hydrophobic Hydrophobic 0.24 View
E-G E-G K462 K146 K462 K146 Repulsive Repulsive 0.43 View
E-G E-G E465 L155 E465 L155 Hydrophobic Hydrophobic 0.18 View
E-G E-G R466 S157 R466 S157 Hydrogen Bonds Hydrogen Bonds 0.14 View
E-G E-G Y396 N153 Y396 N153 Hydrophobic Hydrophobic 0.41 View
E-G E-G R466 H190 R466 H190 Repulsive Repulsive 0.45 View
E-G E-G R466 H190 R466 H190 Repulsive Repulsive 0.39 View
E-G E-G Y396 N153 Y396 N153 Hydrogen Bonds Hydrogen Bonds 0.32 View
E-G E-G R466 H190 R466 H190 Repulsive Repulsive 0.38 View
E-G E-G R466 H190 R466 H190 Repulsive Hydrogen Bonds Repulsive Hydrogen Bonds 0.44 View
E-G E-G E516 N153 E516 N153 Hydrogen Bonds Hydrogen Bonds 0.32 View
E-G E-G F464 L155 F464 L155 Hydrophobic Hydrophobic 0.36 View
E-G E-G E465 L155 E465 L155 Hydrophobic Hydrophobic 0.16 View
E-G E-G W353 A154 W353 A154 Hydrophobic Hydrophobic 0.25 View
E-G E-G W353 A154 W353 A154 Hydrophobic Hydrophobic 0.23 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6ZDG | 6ZDG_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6ZDG_uk_mut E-G R355 D152 Hydrogen Bonds 3.59 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph