VTR

16 main matches found (59 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.37

VTR = 0.0

Average AVD = 0.33 Å

Parameters

Chains(6XDG.pdb ): E versus B

Chains(6XDG_uk_mut.pdb ) E versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XDG 1043 43 2 11 0 0 4 60
B6XDG_uk_mut 1043 44 2 14 0 0 4 64

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.26 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.23 View
E-B E-B Y489 Y33 Y489 Y33 Aromatic Stacking Aromatic Stacking 0.2 View
E-B E-B E484 S56 E484 S56 Hydrogen Bonds Hydrogen Bonds 0.39 View
E-B E-B Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.26 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.16 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.25 View
E-B E-B K417 D31 K417 D31 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.71 View
E-B E-B K417 D31 K417 D31 Attractive Attractive 0.48 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.14 View
E-B E-B F486 Y50 F486 Y50 Hydrophobic Hydrophobic 0.36 View
E-B E-B Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.28 View
E-B E-B K417 T102 K417 T102 Hydrogen Bonds Hydrogen Bonds 0.38 View
E-B E-B E484 Y53 E484 Y53 Hydrogen Bonds Hydrogen Bonds 0.39 View
E-B E-B F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.39 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.26 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.2 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.24 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.24 View
E-B E-B F486 Y50 F486 Y50 Hydrophobic Hydrophobic 0.38 View
E-B E-B G485 Y33 G485 Y33 Hydrogen Bonds Hydrogen Bonds 0.43 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.16 View
E-B E-B E484 Y53 E484 Y53 Hydrogen Bonds Hydrogen Bonds 0.52 View
E-B E-B L455 D31 L455 D31 Hydrophobic Hydrophobic 0.77 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.29 View
E-B E-B F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.43 View
E-B E-B F486 Y59 F486 Y59 Hydrogen Bonds Hydrogen Bonds 0.3 View
E-B E-B L455 D31 L455 D31 Hydrophobic Hydrophobic 0.61 View
E-B E-B Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.25 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.36 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.28 View
E-B E-B Y453 D31 Y453 D31 Hydrogen Bonds Hydrogen Bonds 0.45 View
E-B E-B F486 Y50 F486 Y50 Hydrophobic Hydrophobic 0.34 View
E-B E-B L455 D31 L455 D31 Hydrophobic Hydrophobic 0.51 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.32 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.16 View
E-B E-B F486 Y50 F486 Y50 Hydrophobic Hydrophobic 0.35 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.32 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.28 View
E-B E-B Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.25 View
E-B E-B A475 M104 A475 M104 Hydrophobic Hydrophobic 0.84 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.22 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.15 View
E-B E-B F486 R100 F486 R100 Hydrogen Bonds Hydrogen Bonds 0.66 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.19 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.14 View
E-B E-B Y489 Y33 Y489 Y33 Hydrogen Bonds Hydrogen Bonds 0.31 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.14 View
E-B E-B F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.4 View
E-B E-B F486 Y59 F486 Y59 Aromatic Stacking Aromatic Stacking 0.34 View
E-B E-B Y489 Y53 Y489 Y53 Aromatic Stacking Aromatic Stacking 0.2 View
E-B E-B C488 Y33 C488 Y33 Hydrogen Bonds Hydrogen Bonds 0.39 View
E-B E-B Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.3 View
E-B E-B F486 Y50 F486 Y50 Aromatic Stacking Aromatic Stacking 0.38 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.24 View
E-B E-B E484 T57 E484 T57 Hydrophobic Hydrophobic 0.35 View
E-B E-B Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.33 View
E-B E-B F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.35 View
E-B E-B Y489 Y53 Y489 Y53 Hydrophobic Hydrophobic 0.12 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XDG | 6XDG_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XDG_uk_mut E-B K417 Y32 Hydrogen Bonds 3.86 View
6XDG_uk_mut E-B E484 S54 Hydrogen Bonds 3.75 View
6XDG_uk_mut E-B Y489 D31 Hydrogen Bonds 3.46 View
6XDG_uk_mut E-B Q498 A75 Hydrophobic 4.36 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph