VTR

3 main matches found (9 matches in total )

Execution time: 19.0 seconds

Match RMSD = 0.69

VTR = 0.02

Average AVD = 0.62 Å

Parameters

Chains(6XCN.pdb ): E versus G

Chains(6XCN_uk_mut.pdb ) E versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XCN 3603 6 0 4 0 0 0 10
B6XCN_uk_mut 3603 6 0 4 0 0 0 10

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-G E-G Y505 K31 Y505 K31 Hydrophobic Hydrophobic 0.37 View
E-G E-G Y505 K31 Y505 K31 Hydrophobic Hydrophobic 0.43 View
E-G E-G Y505 K31 Y505 K31 Hydrogen Bonds Hydrogen Bonds 0.49 View
E-G E-G Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.61 View
E-G E-G D405 Y91 D405 Y91 Hydrogen Bonds Hydrogen Bonds 1.37 View
E-G E-G Y505 K31 Y505 K31 Hydrophobic Hydrophobic 0.64 View
E-G E-G Y505 K31 Y505 K31 Hydrophobic Hydrophobic 0.34 View
E-G E-G Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.56 View
E-G E-G D405 Y91 D405 Y91 Hydrogen Bonds Hydrogen Bonds 0.81 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XCN | 6XCN_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XCN E-G G502 G29 Hydrogen Bonds 3.58 View
6XCN_uk_mut E-G Y501 G29 Hydrogen Bonds 3.89 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph