VTR

22 main matches found (40 matches in total )

Execution time: 17.0 seconds

Match RMSD = 0.67

VTR = 0.03

Average AVD = 0.55 Å

Parameters

Chains(6XCM.pdb ): C versus H

Chains(6XCM_uk_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XCM 3368 22 4 21 0 0 2 49
B6XCM_uk_mut 3367 22 1 20 0 0 2 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H N487 F27 N487 F27 Hydrophobic Hydrophobic 0.38 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 1.44 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.33 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.64 View
C-H C-H K417 E99 K417 E99 Attractive Attractive 1.65 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.26 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.5 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.3 View
C-H C-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.57 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.53 View
C-H C-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.57 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.55 View
C-H C-H Y421 Y33 Y421 Y33 Hydrogen Bonds Hydrogen Bonds 0.31 View
C-H C-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.43 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 1.77 View
C-H C-H Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.15 View
C-H C-H G416 Y58 G416 Y58 Hydrogen Bonds Hydrogen Bonds 0.23 View
C-H C-H K458 G54 K458 G54 Hydrogen Bonds Hydrogen Bonds 0.26 View
C-H C-H F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.4 View
C-H C-H F486 Y102 F486 Y102 Hydrophobic Hydrophobic 0.89 View
C-H C-H G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.46 View
C-H C-H Y473 Y33 Y473 Y33 Hydrophobic Hydrophobic 0.79 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.39 View
C-H C-H Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 0.45 View
C-H C-H Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.33 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.41 View
C-H C-H Y473 N32 Y473 N32 Hydrogen Bonds Hydrogen Bonds 0.16 View
C-H C-H Q474 S31 Q474 S31 Hydrogen Bonds Hydrogen Bonds 0.56 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 1.47 View
C-H C-H F486 Y102 F486 Y102 Aromatic Stacking Aromatic Stacking 0.83 View
C-H C-H T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.42 View
C-H C-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.27 View
C-H C-H Y505 W98 Y505 W98 Hydrogen Bonds Hydrogen Bonds 0.8 View
C-H C-H N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.38 View
C-H C-H R457 Y33 R457 Y33 Hydrogen Bonds Hydrogen Bonds 0.31 View
C-H C-H R457 Y33 R457 Y33 Hydrogen Bonds Hydrogen Bonds 0.32 View
C-H C-H K458 S53 K458 S53 Hydrogen Bonds Hydrogen Bonds 0.56 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.28 View
C-H C-H Q474 S31 Q474 S31 Hydrogen Bonds Hydrogen Bonds 0.36 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XCM | 6XCM_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XCM C-H R403 E99 Attractive 5.51 View
6XCM C-H R403 E99 Attractive 4.83 View
6XCM C-H R403 E99 Attractive 5.23 View
6XCM C-H F456 L100 Hydrophobic 4.16 View
6XCM C-H F456 L100 Hydrophobic 3.87 View
6XCM C-H F456 L100 Hydrophobic 3.41 View
6XCM C-H F456 L100 Hydrophobic 3.47 View
6XCM C-H G476 K75 Hydrogen Bonds 3.13 View
6XCM C-H Y505 E99 Hydrogen Bonds 3.02 View
6XCM_uk_mut C-H T415 Y58 Hydrogen Bonds 3.01 View
6XCM_uk_mut C-H F456 Y33 Hydrophobic 4.35 View
6XCM_uk_mut C-H F456 Y33 Hydrophobic 3.91 View
6XCM_uk_mut C-H A475 F27 Hydrophobic 4.38 View
6XCM_uk_mut C-H N487 F27 Hydrophobic 4.28 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph