VTR

3 main matches found (12 matches in total )

Execution time: 13.0 seconds

Match RMSD = 0.6

VTR = 0.03

Average AVD = 0.59 Å

Parameters

Chains(6XC7.pdb ): A versus L

Chains(6XC7_uk_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XC7 1049 12 2 2 0 0 0 16
B6XC7_uk_mut 1049 10 2 2 0 0 0 14

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L L390 W50 L390 W50 Hydrophobic Hydrophobic 0.78 View
A-L A-L K386 E55 K386 E55 Attractive Attractive 0.67 View
A-L A-L V382 W50 V382 W50 Hydrophobic Hydrophobic 0.47 View
A-L A-L K386 Y49 K386 Y49 Hydrophobic Hydrophobic 0.56 View
A-L A-L V382 W50 V382 W50 Hydrophobic Hydrophobic 0.6 View
A-L A-L L390 W50 L390 W50 Hydrophobic Hydrophobic 0.75 View
A-L A-L V382 W50 V382 W50 Hydrophobic Hydrophobic 0.45 View
A-L A-L K386 Y49 K386 Y49 Hydrophobic Hydrophobic 0.45 View
A-L A-L V382 W50 V382 W50 Hydrophobic Hydrophobic 0.58 View
A-L A-L G381 Y32 G381 Y32 Hydrogen Bonds Hydrogen Bonds 0.67 View
A-L A-L K386 Y49 K386 Y49 Hydrophobic Hydrophobic 0.49 View
A-L A-L K386 E55 K386 E55 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.61 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XC7 | 6XC7_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XC7 A-L L390 I28 Hydrophobic 4.49 View
6XC7 A-L F392 I28 Hydrophobic 3.81 View
6XC7 A-L F392 I28 Hydrophobic 4.30 View
6XC7_uk_mut A-L K386 Y49 Hydrophobic 4.47 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph