VTR

18 main matches found (43 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7NXA.pdb ): E versus H

Chains(7NXA_india_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7NXA 1049 25 5 14 0 0 1 45
B7NXA_india_mut 1049 25 5 14 0 0 1 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-E H-E N57 T385 N57 T385 Hydrophobic Hydrophobic 0.0 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 V382 W104 V382 Hydrophobic Hydrophobic 0.0 View
H-E H-E D33 T385 D33 T385 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E Y59 P384 Y59 P384 Hydrophobic Hydrophobic 0.0 View
H-E H-E Y53 N388 Y53 N388 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E W104 T430 W104 T430 Hydrophobic Hydrophobic 0.0 View
H-E H-E N57 N370 N57 N370 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E W104 T430 W104 T430 Hydrophobic Hydrophobic 0.0 View
H-E H-E D33 T385 D33 T385 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E Y106 T385 Y106 T385 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 S383 W104 S383 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E D33 K386 D33 K386 Attractive Attractive 0.0 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 F392 W104 F392 Hydrophobic Hydrophobic 0.0 View
H-E H-E S56 N370 S56 N370 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E D33 K386 D33 K386 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
H-E H-E N57 N370 N57 N370 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.0 View
H-E H-E Y106 S383 Y106 S383 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.0 View
H-E H-E Y59 T385 Y59 T385 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.0 View
H-E H-E Y59 P384 Y59 P384 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 L517 W104 L517 Hydrophobic Hydrophobic 0.0 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.0 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.0 View
H-E H-E Y59 F377 Y59 F377 Aromatic Stacking Aromatic Stacking 0.0 View
H-E H-E W104 L517 W104 L517 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 S383 W104 S383 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E N57 S366 N57 S366 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E D99 K386 D99 K386 Attractive Attractive 0.0 View
H-E H-E D99 K386 D99 K386 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 V382 W104 V382 Hydrophobic Hydrophobic 0.0 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.0 View
H-E H-E S56 N370 S56 N370 Hydrogen Bonds Hydrogen Bonds 0.0 View
H-E H-E D62 K378 D62 K378 Attractive Attractive 0.0 View
H-E H-E W104 F392 W104 F392 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7NXA | 7NXA_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph