VTR

12 main matches found (30 matches in total )

Execution time: 18.0 seconds

Match RMSD = 0.21

VTR = 0.0

Average AVD = 0.04 Å

Parameters

Chains(7M6I.pdb ): C versus H

Chains(7M6I_india_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6I 3428 18 0 11 0 0 1 30
B7M6I_india_mut 3428 18 0 12 0 0 1 31

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H Y449 T28 Y449 T28 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y449 T28 Y449 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H Q493 D100 Q493 D100 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H G482 R50 G482 R50 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H V483 W47 V483 W47 Hydrophobic Hydrophobic 0.0 View
C-H C-H F490 Y99 F490 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H F490 Y99 F490 Y99 Aromatic Stacking Aromatic Stacking 0.0 View
C-H C-H G482 R50 G482 R50 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H L452 M53 R452 M53 Hydrophobic Hydrophobic 1.17 View
C-H C-H V483 W47 V483 W47 Hydrophobic Hydrophobic 0.0 View
C-H C-H F490 Y99 F490 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H L492 M53 L492 M53 Hydrophobic Hydrophobic 0.0 View
C-H C-H F490 Y99 F490 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H Q493 Y99 Q493 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H F490 Y97 F490 Y97 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H Y449 T28 Y449 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H Y449 F29 Y449 F29 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H S494 Y98 S494 Y98 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H L492 Y99 L492 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H F490 Y99 F490 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H F490 Y99 F490 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y473 Y97 Y473 Y97 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H Y473 R50 Y473 R50 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H Y351 M53 Y351 M53 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y351 M53 Y351 M53 Hydrophobic Hydrophobic 0.0 View
C-H C-H F490 Y99 F490 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H F490 Y99 F490 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H L492 Y98 L492 Y98 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H F490 Y99 F490 Y99 Hydrophobic Hydrophobic 0.0 View
C-H C-H V483 R50 V483 R50 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6I | 7M6I_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6I_india_mut C-H R452 Y98 Hydrogen Bonds 3.42 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph