VTR

34 main matches found (43 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7KLH.pdb ): B versus M

Chains(7KLH_india_mut.pdb ) B versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KLH 1269 9 17 18 0 2 2 48
B7KLH_india_mut 1269 9 17 18 0 2 3 49

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
M-B M-B R80 D420 R80 D420 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
M-B M-B D66 R403 D66 R403 Attractive Attractive 0.0 View
M-B M-B Y114 F486 Y114 F486 Hydrophobic Hydrophobic 0.0 View
M-B M-B H108 Y473 H108 Y473 Aromatic Stacking Aromatic Stacking 0.0 View
M-B M-B H108 Y473 H108 Y473 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B D66 K417 D66 K417 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
M-B M-B D66 R403 D66 R403 Attractive Attractive 0.0 View
M-B M-B R80 D420 R80 D420 Attractive Attractive 0.0 View
M-B M-B Y114 F486 Y114 F486 Hydrophobic Hydrophobic 0.0 View
M-B M-B R80 Y421 R80 Y421 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B D66 E406 D66 E406 Repulsive Repulsive 0.0 View
M-B M-B D66 R403 D66 R403 Attractive Attractive 0.0 View
M-B M-B D66 R403 D66 R403 Attractive Attractive 0.0 View
M-B M-B R80 D420 R80 D420 Attractive Attractive 0.0 View
M-B M-B R80 D420 R80 D420 Attractive Attractive 0.0 View
M-B M-B H108 Y489 H108 Y489 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B Y114 F486 Y114 F486 Hydrophobic Hydrophobic 0.0 View
M-B M-B S37 Y421 S37 Y421 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B S37 Y421 S37 Y421 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B Y114 F486 Y114 F486 Hydrophobic Hydrophobic 0.0 View
M-B M-B Y114 N487 Y114 N487 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B D66 R403 D66 R403 Attractive Attractive 0.0 View
M-B M-B S107 Y489 S107 Y489 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B R80 N460 R80 N460 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B Y114 F486 Y114 F486 Aromatic Stacking Aromatic Stacking 0.0 View
M-B M-B Y114 F486 Y114 F486 Hydrophobic Hydrophobic 0.0 View
M-B M-B Y114 N487 Y114 N487 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B D66 R403 D66 R403 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
M-B M-B Y114 F486 Y114 F486 Hydrophobic Hydrophobic 0.0 View
M-B M-B D66 R403 D66 R403 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
M-B M-B D66 E406 D66 E406 Repulsive Repulsive 0.0 View
M-B M-B R80 D420 R80 D420 Attractive Attractive 0.0 View
M-B M-B Y114 F486 Y114 F486 Hydrophobic Hydrophobic 0.0 View
M-B M-B D66 K417 D66 K417 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
M-B M-B R80 N460 R80 N460 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B T109 A475 T109 A475 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B Y55 Y505 Y55 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B Y114 F486 Y114 F486 Hydrophobic Hydrophobic 0.0 View
M-B M-B R80 D420 R80 D420 Attractive Attractive 0.0 View
M-B M-B D66 R403 D66 R403 Attractive Attractive 0.0 View
M-B M-B L67 Y505 L67 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
M-B M-B Y114 F486 Y114 F486 Hydrophobic Hydrophobic 0.0 View
M-B M-B R80 D420 R80 D420 Attractive Attractive 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KLH | 7KLH_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KLH_india_mut M-B H108 Y473 Aromatic Stacking 5.47 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph