VTR

17 main matches found (67 matches in total )

Execution time: 21.0 seconds

Match RMSD = 0.04

VTR = 0.0

Average AVD = 0.01 Å

Parameters

Chains(7KKL.pdb ): C versus E

Chains(7KKL_india_mut.pdb ) C versus E

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KKL 3360 50 4 13 0 0 2 69
B7KKL_india_mut 3360 50 0 15 0 0 2 67

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 Y59 F486 Y59 Aromatic Stacking Aromatic Stacking 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 L47 F486 L47 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y449 N77 Y449 N77 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E E484 R54 Q484 R54 Attractive Hydrogen Bonds 0.24 View
C-E C-E R403 Y27 R403 Y27 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E R403 Y27 R403 Y27 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E E484 T52 Q484 T52 Hydrophobic Hydrophobic 0.05 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E Q493 R31 Q493 R31 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E Q498 G26 Q498 G26 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E F486 L47 F486 L47 Hydrophobic Hydrophobic 0.0 View
C-E C-E E484 R54 Q484 R54 Attractive Hydrogen Bonds 0.24 View
C-E C-E Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y495 Y27 Y495 Y27 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E G446 N77 G446 N77 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y489 D99 Y489 D99 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y449 N77 Y449 N77 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E K417 A104 K417 A104 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E E484 T52 Q484 T52 Hydrophobic Hydrophobic 0.08 View
C-E C-E F490 N32 F490 N32 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E Q493 N32 Q493 N32 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y489 D99 Y489 D99 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E L455 Y105 L455 Y105 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 L47 F486 L47 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Aromatic Stacking Aromatic Stacking 0.0 View
C-E C-E S494 G30 S494 G30 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y505 Y27 Y505 Y27 Hydrophobic Hydrophobic 0.0 View
C-E C-E F490 N32 F490 N32 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 L47 F486 L47 Hydrophobic Hydrophobic 0.0 View
C-E C-E F486 A61 F486 A61 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KKL | 7KKL_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KKL C-E E484 R54 Attractive 5.64 View
7KKL C-E E484 R54 Attractive 4.96 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph