VTR

5 main matches found (12 matches in total )

Execution time: 22.0 seconds

Match RMSD = 0.03

VTR = 0.0

Average AVD = 0.03 Å

Parameters

Chains(7K8V.pdb ): A versus L

Chains(7K8V_india_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8V 3360 7 0 5 0 0 0 12
B7K8V_india_mut 3360 7 0 5 0 0 0 12

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L P499 W32 P499 W32 Hydrophobic Hydrophobic 0.03 View
A-L A-L T345 Y31 T345 Y31 Hydrogen Bonds Hydrogen Bonds 0.02 View
A-L A-L D442 Y31 D442 Y31 Hydrophobic Hydrophobic 0.03 View
A-L A-L R509 Y31 R509 Y31 Hydrogen Bonds Hydrogen Bonds 0.02 View
A-L A-L R509 Y31 R509 Y31 Hydrogen Bonds Hydrogen Bonds 0.02 View
A-L A-L R346 Q50 R346 Q50 Hydrogen Bonds Hydrogen Bonds 0.03 View
A-L A-L T500 Y94 T500 Y94 Hydrophobic Hydrophobic 0.03 View
A-L A-L D442 Y31 D442 Y31 Hydrophobic Hydrophobic 0.02 View
A-L A-L R346 Q50 R346 Q50 Hydrogen Bonds Hydrogen Bonds 0.03 View
A-L A-L N448 W32 N448 W32 Hydrophobic Hydrophobic 0.03 View
A-L A-L T500 Y94 T500 Y94 Hydrophobic Hydrophobic 0.03 View
A-L A-L N448 W32 N448 W32 Hydrophobic Hydrophobic 0.03 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8V | 7K8V_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph