VTR

7 main matches found (11 matches in total )

Execution time: 25.0 seconds

Match RMSD = 0.37

VTR = 0.0

Average AVD = 0.12 Å

Parameters

Chains(7K8T.pdb ): B versus M

Chains(7K8T_india_mut.pdb ) B versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8T 3666 5 0 7 0 0 0 12
B7K8T_india_mut 3666 4 0 8 0 0 0 12

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-M B-M L452 I31 R452 I31 Hydrophobic Hydrophobic 1.21 View
B-M B-M L492 R97 L492 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-M B-M N481 Y58 N481 Y58 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-M B-M Y453 S99 Y453 S99 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-M B-M F490 I31 F490 I31 Hydrophobic Hydrophobic 0.0 View
B-M B-M N481 N56 N481 N56 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-M B-M L452 I31 R452 I31 Hydrophobic Hydrophobic 0.15 View
B-M B-M N481 N56 N481 N56 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-M B-M N481 N56 N481 N56 Hydrophobic Hydrophobic 0.0 View
B-M B-M S494 Y32 S494 Y32 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-M B-M S494 S99 S494 S99 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8T | 7K8T_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8T B-M L452 I31 Hydrophobic 4.33 View
7K8T_india_mut B-M R452 T28 Hydrogen Bonds 3.39 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph