VTR

3 main matches found (17 matches in total )

Execution time: 23.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7K8S.pdb ): C versus N

Chains(7K8S_india_mut.pdb ) C versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8S 3675 14 8 5 0 0 2 29
B7K8S_india_mut 3675 14 0 1 0 0 2 17

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y92 F486 Y92 Aromatic Stacking Aromatic Stacking 0.0 View
C-N C-N Y489 Y32 Y489 Y32 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y32 F486 Y32 Aromatic Stacking Aromatic Stacking 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View
C-N C-N F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8S | 7K8S_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8S C-N E484 T94 Hydrogen Bonds 3.62 View
7K8S C-N E484 R96 Attractive 5.62 View
7K8S C-N E484 R96 Attractive 5.04 View
7K8S C-N E484 R96 Attractive 5.67 View
7K8S C-N E484 R96 Attractive 4.19 View
7K8S C-N E484 R96 Attractive, Hydrogen Bonds 3.59 View
7K8S C-N E484 R96 Attractive 3.01 View
7K8S C-N E484 R96 Attractive, Hydrogen Bonds 3.89 View
7K8S C-N E484 R96 Attractive, Hydrogen Bonds 2.08 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph