VTR

9 main matches found (20 matches in total )

Execution time: 70.0 seconds

Match RMSD = 0.6

VTR = 0.01

Average AVD = 0.19 Å

Parameters

Chains(7K8S.pdb ): A versus H

Chains(7K8S_india_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8S 3675 11 5 7 0 4 0 27
B7K8S_india_mut 3675 11 1 11 0 0 0 23

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.0 View
A-H A-H N481 Y58 N481 Y58 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y449 F27 Y449 F27 Hydrophobic Hydrophobic 0.0 View
A-H A-H E484 E95 Q484 E95 Repulsive Hydrogen Bonds 1.89 View
A-H A-H R403 D100 R403 D100 Attractive Attractive 0.0 View
A-H A-H Q493 P98 Q493 P98 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.0 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.0 View
A-H A-H T470 I31 T470 I31 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y449 V2 Y449 V2 Hydrophobic Hydrophobic 0.0 View
A-H A-H Q493 R97 Q493 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H E484 E95 Q484 E95 Repulsive Hydrogen Bonds 1.89 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y449 F27 Y449 F27 Hydrophobic Hydrophobic 0.0 View
A-H A-H Q493 R97 Q493 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H N481 N56 N481 N56 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H Y449 V2 Y449 V2 Hydrophobic Hydrophobic 0.0 View
A-H A-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.0 View
A-H A-H Q493 S99 Q493 S99 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8S | 7K8S_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8S A-H E484 H35 Attractive 5.10 View
7K8S A-H E484 H35 Attractive 4.68 View
7K8S A-H E484 H35 Attractive 4.34 View
7K8S A-H E484 H35 Attractive, Hydrogen Bonds 3.09 View
7K8S A-H E484 E95 Repulsive 5.84 View
7K8S A-H E484 E95 Repulsive 5.30 View
7K8S_india_mut A-H R452 T28 Hydrogen Bonds 3.36 View
7K8S_india_mut A-H R452 Y32 Hydrogen Bonds 3.77 View
7K8S_india_mut A-H R452 Y32 Hydrogen Bonds 3.00 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph