VTR

6 main matches found (32 matches in total )

Execution time: 28.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7K43.pdb ): E versus C

Chains(7K43_india_mut.pdb ) E versus C

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K43 3783 26 0 3 0 0 3 32
B7K43_india_mut 3783 26 0 3 0 0 3 32

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-E C-E F105 F374 F105 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F342 F105 F342 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F374 F105 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F374 F105 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E W106 F374 W106 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E W106 W436 W106 W436 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 L368 F105 L368 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F374 F105 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 L368 F105 L368 Hydrophobic Hydrophobic 0.0 View
C-E C-E D104 S373 D104 S373 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E W106 W436 W106 W436 Aromatic Stacking Aromatic Stacking 0.0 View
C-E C-E W106 W436 W106 W436 Hydrophobic Hydrophobic 0.0 View
C-E C-E Y103 A372 Y103 A372 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F374 F105 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F342 F105 F342 Hydrophobic Hydrophobic 0.0 View
C-E C-E W106 F342 W106 F342 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E F105 F374 F105 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 S373 F105 S373 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-E C-E Y103 A372 Y103 A372 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F374 F105 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E W106 W436 W106 W436 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F374 F105 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 V367 F105 V367 Hydrophobic Hydrophobic 0.0 View
C-E C-E W106 F374 W106 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F374 F105 F374 Hydrophobic Hydrophobic 0.0 View
C-E C-E W106 W436 W106 W436 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F374 F105 F374 Aromatic Stacking Aromatic Stacking 0.0 View
C-E C-E F105 F342 F105 F342 Hydrophobic Hydrophobic 0.0 View
C-E C-E W106 W436 W106 W436 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F342 F105 F342 Hydrophobic Hydrophobic 0.0 View
C-E C-E W106 W436 W106 W436 Hydrophobic Hydrophobic 0.0 View
C-E C-E F105 F342 F105 F342 Aromatic Stacking Aromatic Stacking 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K43 | 7K43_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph