VTR

7 main matches found (49 matches in total )

Execution time: 50.0 seconds

Match RMSD = 0.18

VTR = 0.0

Average AVD = 0.06 Å

Parameters

Chains(7CZX.pdb ): B versus I

Chains(7CZX_india_mut.pdb ) B versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZX 4368 42 0 6 0 0 1 49
B7CZX_india_mut 4368 43 0 9 0 0 1 53

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-I B-I F486 P110 F486 P110 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I S494 Y32 S494 Y32 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I F486 P110 F486 P110 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y489 I104 Y489 I104 Hydrophobic Hydrophobic 0.0 View
B-I B-I F486 P110 F486 P110 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I E484 W113 Q484 W113 Hydrophobic Hydrophobic 0.13 View
B-I B-I F486 Q108 F486 Q108 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 I29 Y449 I29 Hydrophobic Hydrophobic 0.0 View
B-I B-I F456 I104 F456 I104 Hydrophobic Hydrophobic 0.0 View
B-I B-I F486 Q108 F486 Q108 Hydrophobic Hydrophobic 0.0 View
B-I B-I F486 Q108 F486 Q108 Hydrophobic Hydrophobic 0.0 View
B-I B-I F486 P110 F486 P110 Hydrophobic Hydrophobic 0.0 View
B-I B-I E484 S56 Q484 S56 Hydrogen Bonds Hydrogen Bonds 0.47 View
B-I B-I Y489 I104 Y489 I104 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I E484 P109 Q484 P109 Hydrophobic Hydrophobic 0.13 View
B-I B-I L492 S54 L492 S54 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-I B-I Y489 I104 Y489 I104 Hydrophobic Hydrophobic 0.0 View
B-I B-I E484 P109 Q484 P109 Hydrophobic Hydrophobic 0.13 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I E484 Y33 Q484 Y33 Hydrogen Bonds Hydrogen Bonds 0.47 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y489 P109 Y489 P109 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I F486 Q108 F486 Q108 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y489 P109 Y489 P109 Hydrophobic Hydrophobic 0.0 View
B-I B-I E484 P109 Q484 P109 Hydrophobic Hydrophobic 0.61 View
B-I B-I F456 I104 F456 I104 Hydrophobic Hydrophobic 0.0 View
B-I B-I F486 Q108 F486 Q108 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 I29 Y449 I29 Hydrophobic Hydrophobic 0.0 View
B-I B-I E484 P109 Q484 P109 Hydrophobic Hydrophobic 0.61 View
B-I B-I F486 P110 F486 P110 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I N487 Q108 N487 Q108 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Aromatic Stacking Aromatic Stacking 0.0 View
B-I B-I S494 Y32 S494 Y32 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-I B-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.0 View
B-I B-I E484 W113 Q484 W113 Hydrophobic Hydrophobic 0.61 View
B-I B-I F486 P110 F486 P110 Hydrophobic Hydrophobic 0.0 View
B-I B-I Y449 I29 Y449 I29 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZX | 7CZX_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZX_india_mut B-I R452 Y53 Hydrogen Bonds 3.47 View
7CZX_india_mut B-I R452 Y53 Hydrogen Bonds 3.77 View
7CZX_india_mut B-I R452 S54 Hydrogen Bonds 3.64 View
7CZX_india_mut B-I Q484 W113 Hydrophobic 4.47 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph