VTR

26 main matches found (44 matches in total )

Execution time: 48.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7CZT.pdb ): A versus L

Chains(7CZT_india_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZT 3872 18 6 14 0 6 1 45
B7CZT_india_mut 3872 18 6 14 0 6 1 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L R408 D55 R408 D55 Attractive Attractive 0.0 View
A-L A-L Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
A-L A-L F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.0 View
A-L A-L F456 P100 F456 P100 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
A-L A-L F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.0 View
A-L A-L K417 Y53 K417 Y53 Hydrophobic Hydrophobic 0.0 View
A-L A-L Q414 S56 Q414 S56 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L K417 Y53 K417 Y53 Hydrophobic Hydrophobic 0.0 View
A-L A-L Q493 N102 Q493 N102 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L Q409 S56 Q409 S56 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
A-L A-L Q409 D57 Q409 D57 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L F486 Q1 F486 Q1 Hydrophobic Hydrophobic 0.0 View
A-L A-L R403 D57 R403 D57 Attractive Attractive 0.0 View
A-L A-L K417 D57 K417 D57 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
A-L A-L F486 Q1 F486 Q1 Hydrophobic Hydrophobic 0.0 View
A-L A-L R403 Y51 R403 Y51 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L D405 D57 D405 D57 Repulsive Repulsive 0.0 View
A-L A-L F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.0 View
A-L A-L F486 Q1 F486 Q1 Hydrophobic Hydrophobic 0.0 View
A-L A-L R403 D57 R403 D57 Attractive Attractive 0.0 View
A-L A-L E406 D57 E406 D57 Repulsive Repulsive 0.0 View
A-L A-L E406 D57 E406 D57 Repulsive Repulsive 0.0 View
A-L A-L R408 S56 R408 S56 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L R408 K58 R408 K58 Repulsive Repulsive 0.0 View
A-L A-L S477 D27 S477 D27 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
A-L A-L T415 S56 T415 S56 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L K417 D57 K417 D57 Attractive Attractive 0.0 View
A-L A-L Y421 Y53 Y421 Y53 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L K417 D57 K417 D57 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L R403 D57 R403 D57 Attractive Attractive 0.0 View
A-L A-L Q493 W99 Q493 W99 Hydrophobic Hydrophobic 0.0 View
A-L A-L T415 D55 T415 D55 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L Y489 P100 Y489 P100 Hydrophobic Hydrophobic 0.0 View
A-L A-L F486 L104 F486 L104 Hydrophobic Hydrophobic 0.0 View
A-L A-L F456 P100 F456 P100 Hydrophobic Hydrophobic 0.0 View
A-L A-L R408 K58 R408 K58 Repulsive Repulsive 0.0 View
A-L A-L S477 D27 S477 D27 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L R408 K58 R408 K58 Repulsive Repulsive 0.0 View
A-L A-L F486 Q1 F486 Q1 Hydrophobic Hydrophobic 0.0 View
A-L A-L D420 Y53 D420 Y53 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZT | 7CZT_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph