VTR

13 main matches found (21 matches in total )

Execution time: 7.0 seconds

Match RMSD = 0.3

VTR = 0.01

Average AVD = 0.14 Å

Parameters

Chains(7CHC.pdb ): R versus A

Chains(7CHC_india_mut.pdb ) R versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CHC 1042 10 9 16 0 1 0 36
B7CHC_india_mut 1042 8 1 15 0 0 0 24

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
R-A R-A E484 R102 Q484 R102 Attractive Hydrogen Bonds Hydrogen Bonds 0.65 View
R-A R-A G482 Y105 G482 Y105 Hydrogen Bonds Hydrogen Bonds 0.0 View
R-A R-A Y449 G26 Y449 G26 Hydrogen Bonds Hydrogen Bonds 0.0 View
R-A R-A N450 N74 N450 N74 Hydrogen Bonds Hydrogen Bonds 0.0 View
R-A R-A L452 T31 R452 T31 Hydrophobic Hydrophobic 0.71 View
R-A R-A G482 D106 G482 D106 Hydrogen Bonds Hydrogen Bonds 0.0 View
R-A R-A E484 D106 Q484 D106 Hydrogen Bonds Hydrogen Bonds 0.05 View
R-A R-A R346 S75 R346 S75 Hydrogen Bonds Hydrogen Bonds 0.0 View
R-A R-A E484 R100 Q484 R100 Hydrogen Bonds Hydrogen Bonds 0.08 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.0 View
R-A R-A F490 T31 F490 T31 Hydrophobic Hydrophobic 0.0 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.0 View
R-A R-A E484 R102 Q484 R102 Attractive Hydrogen Bonds Hydrogen Bonds 0.65 View
R-A R-A N450 S75 N450 S75 Hydrogen Bonds Hydrogen Bonds 0.0 View
R-A R-A F490 T31 F490 T31 Hydrophobic Hydrophobic 0.0 View
R-A R-A E484 R100 Q484 R100 Hydrogen Bonds Hydrogen Bonds 0.08 View
R-A R-A G482 L104 G482 L104 Hydrogen Bonds Hydrogen Bonds 0.0 View
R-A R-A V483 Y105 V483 Y105 Hydrophobic Hydrophobic 0.0 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.0 View
R-A R-A L452 T30 R452 T30 Hydrophobic Hydrophobic 0.71 View
R-A R-A R346 S75 R346 S75 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CHC | 7CHC_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CHC R-A L452 A28 Hydrophobic 4.37 View
7CHC R-A L452 T31 Hydrophobic 4.28 View
7CHC R-A E484 R100 Attractive 5.91 View
7CHC R-A E484 R102 Hydrogen Bonds 3.25 View
7CHC R-A E484 R102 Attractive, Hydrogen Bonds 3.18 View
7CHC R-A E484 R102 Attractive 3.93 View
7CHC R-A E484 R102 Attractive 5.23 View
7CHC R-A E484 R102 Attractive, Hydrogen Bonds 3.76 View
7CHC R-A E484 R102 Attractive 3.81 View
7CHC R-A E484 R102 Attractive 5.07 View
7CHC R-A E484 D106 Repulsive 5.05 View
7CHC_india_mut R-A R452 T30 Hydrogen Bonds 3.14 View
7CHC_india_mut R-A R452 T30 Hydrogen Bonds 3.63 View
7CHC_india_mut R-A R452 D53 Attractive 5.97 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph