VTR

8 main matches found (20 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.05

VTR = 0.0

Average AVD = 0.01 Å

Parameters

Chains(7CDJ.pdb ): E versus L

Chains(7CDJ_india_mut.pdb ) E versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CDJ 619 12 0 7 0 0 1 20
B7CDJ_india_mut 619 13 0 7 0 0 1 21

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-L E-L N481 Q25 N481 Q25 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L F486 Y30 F486 Y30 Aromatic Stacking Aromatic Stacking 0.0 View
E-L E-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L N487 Y30 N487 Y30 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L F486 L89 F486 L89 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L N481 S91 N481 S91 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L E484 Y92 Q484 Y92 Hydrogen Bonds Hydrogen Bonds 0.22 View
E-L E-L F486 Y30 F486 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L T478 Y30 T478 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L T478 Y30 T478 Y30 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L T478 N90 T478 N90 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L T478 Y30 T478 Y30 Hydrophobic Hydrophobic 0.0 View
E-L E-L N487 Y30 N487 Y30 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CDJ | 7CDJ_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CDJ_india_mut E-L Q484 Y92 Hydrophobic 4.38 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph