VTR

19 main matches found (21 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.2

VTR = 0.0

Average AVD = 0.06 Å

Parameters

Chains(7C01.pdb ): B versus L

Chains(7C01_india_mut.pdb ) B versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7C01 1256 2 7 12 0 1 0 22
B7C01_india_mut 1256 2 7 12 0 12 0 33

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-B L-B D17 R346 D17 R346 Attractive Attractive 0.0 View
L-B L-B G16 R346 G16 R346 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-B L-B D17 R346 D17 R346 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
L-B L-B T20 N450 T20 N450 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-B L-B T20 Y449 T20 Y449 Hydrophobic Hydrophobic 0.0 View
L-B L-B D17 R346 D17 R346 Attractive Attractive 0.0 View
L-B L-B K109 K444 K109 K444 Repulsive Repulsive 0.0 View
L-B L-B L11 K444 L11 K444 Hydrophobic Hydrophobic 0.0 View
L-B L-B D17 R346 D17 R346 Attractive Attractive 0.0 View
L-B L-B G66 E484 G66 Q484 Hydrogen Bonds Hydrogen Bonds 0.26 View
L-B L-B S67 E484 S67 Q484 Hydrogen Bonds Hydrogen Bonds 0.89 View
L-B L-B D17 R346 D17 R346 Attractive Attractive 0.0 View
L-B L-B T20 Y449 T20 Y449 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-B L-B D17 K444 D17 K444 Attractive Attractive 0.0 View
L-B L-B V15 R346 V15 R346 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-B L-B R18 N450 R18 N450 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-B L-B D17 R346 D17 R346 Attractive Attractive 0.0 View
L-B L-B S7 G446 S7 G446 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-B L-B T20 N450 T20 N450 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-B L-B R18 N450 R18 N450 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-B L-B R18 N450 R18 N450 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7C01 | 7C01_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7C01_india_mut L-B R18 R452 Repulsive 5.66 View
7C01_india_mut L-B R18 R452 Repulsive 5.46 View
7C01_india_mut L-B R18 R452 Repulsive 5.45 View
7C01_india_mut L-B R18 R452 Repulsive 4.51 View
7C01_india_mut L-B R18 R452 Repulsive 5.34 View
7C01_india_mut L-B R18 R452 Repulsive 5.47 View
7C01_india_mut L-B R18 R452 Repulsive 4.76 View
7C01_india_mut L-B R18 R452 Repulsive 4.60 View
7C01_india_mut L-B R18 R452 Repulsive 4.44 View
7C01_india_mut L-B R18 R452 Repulsive 3.39 View
7C01_india_mut L-B R18 R452 Repulsive 5.67 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph