VTR

11 main matches found (31 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.12

VTR = 0.0

Average AVD = 0.02 Å

Parameters

Chains(7BEN.pdb ): E versus A

Chains(7BEN_india_mut.pdb ) E versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7BEN 2095 20 0 10 0 0 1 31
B7BEN_india_mut 2095 20 0 10 0 0 1 31

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-A E-A Y495 R107 Y495 R107 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A Y449 V104 Y449 V104 Hydrophobic Hydrophobic 0.0 View
E-A E-A Q493 A105 Q493 A105 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 V104 Y449 V104 Hydrophobic Hydrophobic 0.0 View
E-A E-A V445 Y111 V445 Y111 Hydrophobic Hydrophobic 0.0 View
E-A E-A L452 V104 R452 V104 Hydrophobic Hydrophobic 0.65 View
E-A E-A Y449 N112 Y449 N112 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A Y449 V104 Y449 V104 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 H109 Y449 H109 Aromatic Stacking Aromatic Stacking 0.0 View
E-A E-A Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.0 View
E-A E-A S494 H109 S494 H109 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A K444 Y111 K444 Y111 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A Y495 R107 Y495 R107 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A V445 Y111 V445 Y111 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.0 View
E-A E-A G446 Y110 G446 Y110 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A F490 A105 F490 A105 Hydrophobic Hydrophobic 0.0 View
E-A E-A F490 A105 F490 A105 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 V104 Y449 V104 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 H109 Y449 H109 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.0 View
E-A E-A K444 N112 K444 N112 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A S494 R107 S494 R107 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A N448 H109 N448 H109 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-A E-A Y449 H109 Y449 H109 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.0 View
E-A E-A Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7BEN | 7BEN_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph