VTR

17 main matches found (34 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.26

VTR = 0.0

Average AVD = 0.05 Å

Parameters

Chains(7B3O.pdb ): E versus L

Chains(7B3O_india_mut.pdb ) E versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7B3O 613 17 0 17 0 0 1 35
B7B3O_india_mut 613 17 0 16 0 0 1 34

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-L E-L Q409 Y94 Q409 Y94 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 Q90 Y505 Q90 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 I2 Y505 I2 Hydrophobic Hydrophobic 0.0 View
E-L E-L Y453 N92 Y453 N92 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L R403 N92 R403 N92 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View
E-L E-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.0 View
E-L E-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.0 View
E-L E-L Q498 S67 Q498 S67 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 Y32 Y505 Y32 Aromatic Stacking Aromatic Stacking 0.0 View
E-L E-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.0 View
E-L E-L Y505 L91 Y505 L91 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View
E-L E-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.0 View
E-L E-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View
E-L E-L S494 Y32 S494 Y32 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.0 View
E-L E-L Y495 Y32 Y495 Y32 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View
E-L E-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.0 View
E-L E-L Y505 N92 Y505 N92 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L N501 S30 N501 S30 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Q498 S30 Q498 S31 Hydrogen Bonds Hydrogen Bonds 1.52 View
E-L E-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.0 View
E-L E-L Q498 S67 Q498 S67 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 I2 Y505 I2 Hydrophobic Hydrophobic 0.0 View
E-L E-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.0 View
E-L E-L G502 G28 G502 G28 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L T500 G28 T500 G28 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 S93 Y505 S93 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L R403 N92 R403 N92 Hydrogen Bonds Hydrogen Bonds 0.0 View
E-L E-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View
E-L E-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.0 View
E-L E-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7B3O | 7B3O_india_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7B3O E-L G496 S30 Hydrogen Bonds 3.44 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph