VTR

15 main matches found (24 matches in total )

Execution time: 35.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7NTC.pdb ): C versus L

Chains(7NTC_brazil_mut.pdb ) C versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7NTC 3698 9 0 12 0 2 1 24
B7NTC_brazil_mut 3698 9 0 12 0 2 2 25

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-L C-L A260 N72 A260 N72 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L H245 Y68 H245 Y68 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L T259 N72 T259 N72 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L K97 Y51 K97 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L S71 G85 S71 G85 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L S71 G85 S71 G85 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L S247 L73 S247 L73 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L L249 T75 L249 T75 Hydrophobic Hydrophobic 0.0 View
C-L C-L V213 D47 V213 D47 Hydrophobic Hydrophobic 0.0 View
C-L C-L K97 Y51 K97 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L K97 H110 K97 H110 Repulsive Repulsive 0.0 View
C-L C-L K97 Y51 K97 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L K97 Y51 K97 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L T259 N72 T259 N72 Hydrophobic Hydrophobic 0.0 View
C-L C-L N185 D111 N185 D111 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L K97 Y51 K97 Y51 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L L249 T75 L249 T75 Hydrophobic Hydrophobic 0.0 View
C-L C-L H245 Y68 H245 Y68 Aromatic Stacking Aromatic Stacking 0.0 View
C-L C-L K97 H110 K97 H110 Repulsive Repulsive 0.0 View
C-L C-L A260 N72 A260 N72 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L T259 S71 T259 S71 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L Y248 T75 Y248 T75 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L K97 Y51 K97 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L S71 G85 S71 G85 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7NTC | 7NTC_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7NTC_brazil_mut C-L H245 Y68 Aromatic Stacking 5.90 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph