VTR

23 main matches found (31 matches in total )

Execution time: 39.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7NTC.pdb ): C versus H

Chains(7NTC_brazil_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7NTC 3698 8 0 16 0 8 1 33
B7NTC_brazil_mut 3698 8 0 16 0 8 1 33

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H K150 S47 K150 S47 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H W152 Y131 W152 Y131 Hydrophobic Hydrophobic 0.0 View
C-H C-H H245 R119 H245 R119 Repulsive Hydrogen Bonds Repulsive Hydrogen Bonds 0.0 View
C-H C-H W152 Y51 W152 Y51 Hydrophobic Hydrophobic 0.0 View
C-H C-H H245 R119 H245 R119 Repulsive Repulsive 0.0 View
C-H C-H K97 S125 K97 S125 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H H245 R119 H245 R119 Repulsive Repulsive 0.0 View
C-H C-H H245 R119 H245 R119 Repulsive Repulsive 0.0 View
C-H C-H K97 S125 K97 S125 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H Q183 Y78 Q183 Y78 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H K182 I77 K182 I77 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H H245 R119 H245 R119 Repulsive Repulsive 0.0 View
C-H C-H E180 Y76 E180 Y76 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H N185 N126 N185 N126 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H K97 N126 K97 N126 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H S98 S124 S98 S124 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H W152 Y51 W152 Y51 Hydrophobic Hydrophobic 0.0 View
C-H C-H S151 Y131 S151 Y131 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H N185 N126 N185 N126 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H W152 Y131 W152 Y131 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H A123 P121 A123 P121 Hydrophobic Hydrophobic 0.0 View
C-H C-H T124 Y122 T124 Y122 Hydrophobic Hydrophobic 0.0 View
C-H C-H H245 R119 H245 R119 Repulsive Hydrogen Bonds Repulsive Hydrogen Bonds 0.0 View
C-H C-H W152 D130 W152 D130 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H K150 F46 K150 F46 Hydrophobic Hydrophobic 0.0 View
C-H C-H K97 S125 K97 S125 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H W152 Y131 W152 Y131 Hydrophobic Hydrophobic 0.0 View
C-H C-H E180 D123 E180 D123 Repulsive Repulsive 0.0 View
C-H C-H W152 Y131 W152 Y131 Aromatic Stacking Aromatic Stacking 0.0 View
C-H C-H H245 R119 H245 R119 Repulsive Repulsive 0.0 View
C-H C-H W152 Y51 W152 Y51 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7NTC | 7NTC_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph