VTR

9 main matches found (30 matches in total )

Execution time: 49.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7NDA.pdb ): C versus H

Chains(7NDA_brazil_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7NDA 3452 21 0 9 0 0 1 31
B7NDA_brazil_mut 3452 21 0 8 0 0 1 30

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H F486 P99 F486 P99 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H F486 F110 F486 F110 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y473 T104 Y473 T104 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H F486 F110 F486 F110 Hydrophobic Hydrophobic 0.0 View
C-H C-H S477 D108 S477 D108 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H F486 P99 F486 P99 Hydrophobic Hydrophobic 0.0 View
C-H C-H S477 D108 S477 D108 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H F486 F110 F486 F110 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H F486 F110 F486 F110 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H S477 D108 S477 D108 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H F486 F110 F486 F110 Aromatic Stacking Aromatic Stacking 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y473 T104 Y473 T104 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H A475 C106 A475 C106 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y489 W50 Y489 W50 Hydrophobic Hydrophobic 0.0 View
C-H C-H T478 D108 T478 D108 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H A475 C106 A475 C106 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H N487 Y107 N487 Y107 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-H C-H F486 P99 F486 P99 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y489 W50 Y489 W50 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H Y489 V52 Y489 V52 Hydrophobic Hydrophobic 0.0 View
C-H C-H F486 P99 F486 P99 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7NDA | 7NDA_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7NDA C-H K417 T30 Hydrogen Bonds 3.84 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph