VTR

26 main matches found (55 matches in total )

Execution time: 47.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7ND5.pdb ): B versus H

Chains(7ND5_brazil_mut.pdb ) B versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7ND5 3406 31 0 26 0 0 0 57
B7ND5_brazil_mut 3406 29 0 26 0 0 0 55

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-H B-H L455 Y102 L455 Y102 Hydrophobic Hydrophobic 0.0 View
B-H B-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H K458 S53 K458 S53 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.0 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.0 View
B-H B-H N487 R97 N487 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.0 View
B-H B-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H Y489 L99 Y489 L99 Hydrophobic Hydrophobic 0.0 View
B-H B-H L455 M100 L455 M100 Hydrophobic Hydrophobic 0.0 View
B-H B-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H Q493 V101 Q493 V101 Hydrophobic Hydrophobic 0.0 View
B-H B-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H G416 Y58 G416 Y58 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.0 View
B-H B-H L455 M100 L455 M100 Hydrophobic Hydrophobic 0.0 View
B-H B-H F456 L99 F456 L99 Hydrophobic Hydrophobic 0.0 View
B-H B-H F456 L99 F456 L99 Hydrophobic Hydrophobic 0.0 View
B-H B-H G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H S477 G26 S477 G26 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H L455 M100 L455 M100 Hydrophobic Hydrophobic 0.0 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.0 View
B-H B-H Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 0.0 View
B-H B-H K458 G54 K458 G54 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H Q493 Y102 Q493 Y102 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H Y489 L99 Y489 L99 Hydrophobic Hydrophobic 0.0 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.0 View
B-H B-H Y421 Y33 Y421 Y33 Hydrophobic Hydrophobic 0.0 View
B-H B-H Y489 L99 Y489 L99 Hydrophobic Hydrophobic 0.0 View
B-H B-H N487 R97 N487 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H Y473 S53 Y473 S53 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H S477 T28 S477 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H L455 Y33 L455 Y33 Hydrophobic Hydrophobic 0.0 View
B-H B-H F486 V106 F486 V106 Hydrophobic Hydrophobic 0.0 View
B-H B-H F456 Y102 F456 Y102 Hydrophobic Hydrophobic 0.0 View
B-H B-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H F456 Y102 F456 Y102 Hydrophobic Hydrophobic 0.0 View
B-H B-H D420 T56 D420 T56 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H A475 N32 A475 N32 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.0 View
B-H B-H Y489 L99 Y489 L99 Hydrophobic Hydrophobic 0.0 View
B-H B-H L455 Y102 L455 Y102 Hydrophobic Hydrophobic 0.0 View
B-H B-H S477 G26 S477 G26 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H D420 T56 D420 T56 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H Y489 L99 Y489 L99 Hydrophobic Hydrophobic 0.0 View
B-H B-H Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-H B-H T415 T56 T415 T56 Hydrophobic Hydrophobic 0.0 View
B-H B-H F456 Y102 F456 Y102 Hydrophobic Hydrophobic 0.0 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7ND5 | 7ND5_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7ND5 B-H K417 M100 Hydrophobic 4.42 View
7ND5 B-H K417 M100 Hydrophobic 3.99 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph