VTR

12 main matches found (24 matches in total )

Execution time: 24.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7ND4.pdb ): C versus L

Chains(7ND4_brazil_mut.pdb ) C versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7ND4 3729 12 7 6 0 1 1 27
B7ND4_brazil_mut 3729 16 6 5 0 1 1 29

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-L C-L R403 D53 R403 D53 Attractive Attractive 0.0 View
C-L C-L R403 D53 R403 D53 Attractive Attractive 0.0 View
C-L C-L F456 Y51 F456 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L G502 D61 G502 D61 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L R403 D53 R403 D53 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
C-L C-L L455 Y51 L455 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L F456 Y51 F456 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L F456 Y51 F456 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L F456 Y51 F456 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L L455 Y51 L455 Y51 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L E406 D53 E406 D53 Repulsive Repulsive 0.0 View
C-L C-L F456 Y51 F456 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L R403 D53 R403 D53 Attractive Attractive 0.0 View
C-L C-L L455 Y51 L455 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L F456 Y51 F456 Y51 Aromatic Stacking Aromatic Stacking 0.0 View
C-L C-L L455 Y51 L455 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L F456 Y51 F456 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L L455 Y51 L455 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L L455 Y51 L455 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L Y505 D53 Y505 D53 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L R403 D53 R403 D53 Attractive Attractive 0.0 View
C-L C-L R403 D53 R403 D53 Attractive Attractive 0.0 View
C-L C-L L455 Y51 L455 Y51 Hydrophobic Hydrophobic 0.0 View
C-L C-L R403 D53 R403 D53 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7ND4 | 7ND4_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7ND4 C-L K417 Y51 Hydrogen Bonds 2.60 View
7ND4 C-L K417 D52 Attractive 5.56 View
7ND4_brazil_mut C-L Y501 L55 Hydrophobic 4.02 View
7ND4_brazil_mut C-L Y501 D61 Hydrophobic 4.46 View
7ND4_brazil_mut C-L Y501 D61 Hydrophobic 3.49 View
7ND4_brazil_mut C-L Y501 D61 Hydrophobic 3.86 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph