VTR

5 main matches found (31 matches in total )

Execution time: 22.0 seconds

Match RMSD = 0.09

VTR = 0.0

Average AVD = 0.05 Å

Parameters

Chains(7M6H.pdb ): B versus D

Chains(7M6H_brazil_mut.pdb ) B versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6H 3440 26 0 5 0 0 0 31
B7M6H_brazil_mut 3440 30 2 7 0 1 0 40

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.1 View
B-D B-D Q493 I53 Q493 I53 Hydrophobic Hydrophobic 0.0 View
B-D B-D F490 I53 F490 I53 Hydrophobic Hydrophobic 0.0 View
B-D B-D Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
B-D B-D Y449 T76 Y449 T76 Hydrophobic Hydrophobic 0.0 View
B-D B-D S494 T30 S494 T30 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
B-D B-D Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D Y449 T76 Y449 T76 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
B-D B-D Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
B-D B-D Y489 C99 Y489 C99 Hydrophobic Hydrophobic 0.0 View
B-D B-D Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.0 View
B-D B-D F490 I53 F490 I53 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.1 View
B-D B-D Y449 T76 Y449 T76 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.1 View
B-D B-D L452 I53 L452 I53 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.1 View
B-D B-D F490 I53 F490 I53 Hydrophobic Hydrophobic 0.0 View
B-D B-D Y449 T76 Y449 T76 Hydrophobic Hydrophobic 0.0 View
B-D B-D Y449 T30 Y449 T30 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.1 View
B-D B-D Y449 T76 Y449 T76 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.1 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
B-D B-D Y489 C99 Y489 C99 Hydrophobic Hydrophobic 0.0 View
B-D B-D Q493 T30 Q493 T30 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D Q493 I53 Q493 I53 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6H | 7M6H_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6H_brazil_mut B-D K484 D33 Attractive 5.20 View
7M6H_brazil_mut B-D K484 D33 Attractive, Hydrogen Bonds 4.79 View
7M6H_brazil_mut B-D K484 N35 Hydrogen Bonds 3.77 View
7M6H_brazil_mut B-D K484 W50 Hydrophobic 3.57 View
7M6H_brazil_mut B-D K484 W50 Hydrophobic 3.65 View
7M6H_brazil_mut B-D K484 W50 Hydrophobic 3.75 View
7M6H_brazil_mut B-D K484 W50 Hydrophobic 3.86 View
7M6H_brazil_mut B-D K484 R97 Repulsive 5.98 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph