VTR

17 main matches found (50 matches in total )

Execution time: 33.0 seconds

Match RMSD = 0.44

VTR = 0.0

Average AVD = 0.21 Å

Parameters

Chains(7M6H.pdb ): A versus E

Chains(7M6H_brazil_mut.pdb ) A versus E

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6H 3440 33 0 15 0 2 1 51
B7M6H_brazil_mut 3440 37 2 19 0 0 1 59

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-E A-E Q493 I53 Q493 I53 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 T76 Y449 T76 Hydrophobic Hydrophobic 0.0 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.79 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.79 View
A-E A-E Y505 T28 Y505 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E E484 N56 K484 N56 Hydrophobic Hydrophobic 0.78 View
A-E A-E Y489 R97 Y489 R97 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 F29 Y449 F29 Aromatic Stacking Aromatic Stacking 0.0 View
A-E A-E E484 N52 K484 N52 Hydrogen Bonds Hydrogen Bonds 1.92 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E Q493 T30 Q493 T30 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Q498 G26 Q498 G26 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E E484 W50 K484 W50 Hydrogen Bonds Hydrogen Bonds 0.09 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E L492 S54 L492 S54 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.79 View
A-E A-E Y449 T76 Y449 T76 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y489 D33 Y489 D33 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
A-E A-E K444 S74 K444 S74 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 Y27 Y449 Y27 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.79 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 G26 Y449 G26 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
A-E A-E E484 D33 K484 D33 Repulsive Attractive Hydrogen Bonds 0.8 View
A-E A-E Y489 C99 Y489 C99 Hydrophobic Hydrophobic 0.0 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
A-E A-E Y449 Y27 Y449 Y27 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E F490 I53 F490 I53 Hydrophobic Hydrophobic 0.0 View
A-E A-E E484 D33 K484 D33 Repulsive Attractive Hydrogen Bonds 0.8 View
A-E A-E Q493 C99 Q493 C99 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.79 View
A-E A-E G446 G26 G446 G26 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y449 T76 Y449 T76 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y489 I53 Y489 I53 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.0 View
A-E A-E S494 T30 S494 T30 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E E484 W50 K484 W50 Hydrophobic Hydrophobic 0.2 View
A-E A-E E484 N52 K484 N52 Hydrophobic Hydrophobic 0.78 View
A-E A-E F490 I53 F490 I53 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6H | 7M6H_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6H A-E K417 S100 Hydrogen Bonds 3.30 View
7M6H_brazil_mut A-E K484 W50 Hydrophobic 4.47 View
7M6H_brazil_mut A-E K484 W50 Hydrophobic 4.37 View
7M6H_brazil_mut A-E K484 N52 Hydrophobic 3.80 View
7M6H_brazil_mut A-E K484 N52 Hydrophobic 4.22 View
7M6H_brazil_mut A-E Y501 Q1 Hydrogen Bonds 3.23 View
7M6H_brazil_mut A-E Y501 Q1 Hydrogen Bonds 3.13 View
7M6H_brazil_mut A-E Y501 T28 Hydrogen Bonds 3.55 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph