VTR

2 main matches found (8 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7M6D.pdb ): C versus L

Chains(7M6D_brazil_mut.pdb ) C versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6D 1050 6 0 2 0 0 0 8
B7M6D_brazil_mut 1050 16 0 5 0 0 0 21

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-L C-L Y505 P29 Y505 P29 Hydrophobic Hydrophobic 0.0 View
C-L C-L Y505 P29 Y505 P29 Hydrophobic Hydrophobic 0.0 View
C-L C-L Y505 P29 Y505 P29 Hydrophobic Hydrophobic 0.0 View
C-L C-L Y505 P29 Y505 P29 Hydrophobic Hydrophobic 0.0 View
C-L C-L Y505 P29 Y505 P29 Hydrophobic Hydrophobic 0.0 View
C-L C-L R403 Y32 R403 Y32 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-L C-L Y505 P29 Y505 P29 Hydrophobic Hydrophobic 0.0 View
C-L C-L R403 G92 R403 G92 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6D | 7M6D_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 3.98 View
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 3.77 View
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 3.68 View
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 3.81 View
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 4.08 View
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 3.78 View
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 3.82 View
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 3.79 View
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 3.79 View
7M6D_brazil_mut C-L Y501 P29 Hydrophobic 4.30 View
7M6D_brazil_mut C-L Y501 S30 Hydrogen Bonds 3.41 View
7M6D_brazil_mut C-L Y501 S30 Hydrogen Bonds 2.99 View
7M6D_brazil_mut C-L Y501 S67 Hydrogen Bonds 3.11 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph