VTR

13 main matches found (21 matches in total )

Execution time: 34.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7LD1.pdb ): C versus N

Chains(7LD1_brazil_mut.pdb ) C versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LD1 4251 8 0 13 0 0 0 21
B7LD1_brazil_mut 4251 8 0 13 0 0 0 21

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-N C-N T415 S51 T415 S51 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N Y505 I21 Y505 I21 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N Q414 Y50 Q414 Y50 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N Y505 P120 Y505 P120 Hydrophobic Hydrophobic 0.0 View
C-N C-N Q409 Y50 Q409 Y50 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N R408 Y117 R408 Y117 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N V503 L119 V503 L119 Hydrophobic Hydrophobic 0.0 View
C-N C-N Y505 D20 Y505 D20 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N V503 L119 V503 L119 Hydrophobic Hydrophobic 0.0 View
C-N C-N T415 S52 T415 S52 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N Y505 D20 Y505 D20 Hydrophobic Hydrophobic 0.0 View
C-N C-N R408 Y117 R408 Y117 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N D405 S118 D405 S118 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N Q409 Y50 Q409 Y50 Hydrophobic Hydrophobic 0.0 View
C-N C-N G416 S51 G416 S51 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N R408 Y50 R408 Y50 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N Q414 Y50 Q414 Y50 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-N C-N R408 Y50 R408 Y50 Hydrophobic Hydrophobic 0.0 View
C-N C-N R408 Y50 R408 Y50 Hydrophobic Hydrophobic 0.0 View
C-N C-N R408 Y50 R408 Y50 Hydrophobic Hydrophobic 0.0 View
C-N C-N D405 S118 D405 S118 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LD1 | 7LD1_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph