VTR

8 main matches found (12 matches in total )

Execution time: 88.0 seconds

Match RMSD = 0.49

VTR = 0.03

Average AVD = 0.19 Å

Parameters

Chains(7LAA.pdb ): A versus H

Chains(7LAA_brazil_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LAA 2985 4 16 13 0 2 0 35
B7LAA_brazil_mut 2985 4 0 8 0 4 0 16

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H E484 R96 K484 R96 Attractive Hydrogen Bonds Hydrogen Bonds 1.57 View
A-H A-H F486 S31 F486 S31 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H E484 R96 K484 R96 Hydrophobic Hydrophobic 0.68 View
A-H A-H L452 D99 L452 D99 Hydrophobic Hydrophobic 0.0 View
A-H A-H S494 D54 S494 D54 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H L452 D99 L452 D99 Hydrophobic Hydrophobic 0.0 View
A-H A-H S494 S56 S494 S56 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H Y449 R97 Y449 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H Q493 D54 Q493 D54 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H L492 R52 L492 R52 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H L452 D99 L452 D99 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y449 R97 Y449 R97 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LAA | 7LAA_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LAA A-H E484 R94 Attractive 4.91 View
7LAA A-H E484 R94 Attractive 3.66 View
7LAA A-H E484 R94 Attractive, Hydrogen Bonds 2.81 View
7LAA A-H E484 R94 Attractive, Hydrogen Bonds 3.59 View
7LAA A-H E484 R94 Attractive 4.55 View
7LAA A-H E484 R94 Attractive 3.37 View
7LAA A-H E484 R94 Attractive, Hydrogen Bonds 3.28 View
7LAA A-H E484 R94 Attractive, Hydrogen Bonds 2.71 View
7LAA A-H E484 R96 Attractive 4.05 View
7LAA A-H E484 R96 Attractive 4.79 View
7LAA A-H E484 R96 Attractive 5.94 View
7LAA A-H E484 R96 Attractive 4.69 View
7LAA A-H E484 R96 Attractive, Hydrogen Bonds 2.77 View
7LAA A-H E484 R96 Attractive 3.15 View
7LAA A-H E484 R96 Attractive 4.41 View
7LAA A-H E484 D101 Repulsive 4.50 View
7LAA A-H E484 D101 Repulsive 4.73 View
7LAA_brazil_mut A-H K484 R96 Repulsive 5.21 View
7LAA_brazil_mut A-H K484 R96 Repulsive 4.43 View
7LAA_brazil_mut A-H K484 R96 Repulsive 3.81 View
7LAA_brazil_mut A-H K484 R96 Repulsive 4.72 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph