VTR

17 main matches found (53 matches in total )

Execution time: 29.0 seconds

Match RMSD = 0.21

VTR = 0.0

Average AVD = 0.08 Å

Parameters

Chains(7L3N.pdb ): B versus D

Chains(7L3N_brazil_mut.pdb ) B versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L3N 3056 36 8 15 0 1 1 61
B7L3N_brazil_mut 3056 39 0 12 0 5 1 57

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-D B-D S494 R104 S494 R104 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D L452 L55 L452 L55 Hydrophobic Hydrophobic 0.0 View
B-D B-D L452 I54 L452 I54 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 Y110 K484 Y110 Hydrophobic Hydrophobic 0.41 View
B-D B-D S494 N31 S494 N31 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D F490 L55 F490 L55 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 R50 K484 R50 Attractive Repulsive 0.65 View
B-D B-D Q493 E102 Q493 E102 Hydrophobic Hydrophobic 0.0 View
B-D B-D F490 Y101 F490 Y101 Hydrophobic Hydrophobic 0.0 View
B-D B-D G485 Y110 G485 Y110 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D F490 I52 F490 I52 Hydrophobic Hydrophobic 0.0 View
B-D B-D G482 N59 G482 N59 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D S494 R104 S494 R104 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D F490 Y101 F490 Y101 Aromatic Stacking Aromatic Stacking 0.0 View
B-D B-D F490 Y101 F490 Y101 Hydrophobic Hydrophobic 0.0 View
B-D B-D C488 Y110 C488 Y110 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D F490 I52 F490 I52 Hydrophobic Hydrophobic 0.0 View
B-D B-D L492 L55 L492 L55 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 Y110 K484 Y110 Hydrophobic Hydrophobic 0.41 View
B-D B-D V483 W47 V483 W47 Hydrophobic Hydrophobic 0.0 View
B-D B-D F456 A103 F456 A103 Hydrophobic Hydrophobic 0.0 View
B-D B-D L452 I54 L452 I54 Hydrophobic Hydrophobic 0.0 View
B-D B-D F490 Y101 F490 Y101 Hydrophobic Hydrophobic 0.0 View
B-D B-D S494 E102 S494 E102 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D E484 Y110 K484 Y110 Hydrophobic Hydrophobic 0.2 View
B-D B-D S494 N31 S494 N31 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D L492 L55 L492 L55 Hydrophobic Hydrophobic 0.0 View
B-D B-D L452 I54 L452 I54 Hydrophobic Hydrophobic 0.0 View
B-D B-D F490 L55 F490 L55 Hydrophobic Hydrophobic 0.0 View
B-D B-D F490 Y101 F490 Y101 Hydrophobic Hydrophobic 0.0 View
B-D B-D F490 Y101 F490 Y101 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 Y110 K484 Y110 Hydrophobic Hydrophobic 0.41 View
B-D B-D V483 W47 V483 W47 Hydrophobic Hydrophobic 0.0 View
B-D B-D F490 I52 F490 I52 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 Y110 K484 Y110 Hydrophobic Hydrophobic 0.41 View
B-D B-D E484 R50 K484 R50 Attractive Hydrogen Bonds Repulsive 0.65 View
B-D B-D G485 Y110 G485 Y110 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D L452 L55 L452 L55 Hydrophobic Hydrophobic 0.0 View
B-D B-D Y489 A103 Y489 A103 Hydrophobic Hydrophobic 0.0 View
B-D B-D E484 R50 K484 R50 Attractive Hydrogen Bonds Repulsive 0.65 View
B-D B-D F490 Y101 F490 Y101 Hydrophobic Hydrophobic 0.0 View
B-D B-D Q493 R104 Q493 R104 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D Q493 E102 Q493 E102 Hydrophobic Hydrophobic 0.0 View
B-D B-D F490 Y101 F490 Y101 Hydrophobic Hydrophobic 0.0 View
B-D B-D Y449 N31 Y449 N31 Hydrophobic Hydrophobic 0.0 View
B-D B-D Y453 R104 Y453 R104 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-D B-D E484 R50 K484 R50 Attractive Repulsive 0.65 View
B-D B-D F456 A103 F456 A103 Hydrophobic Hydrophobic 0.0 View
B-D B-D R403 R104 R403 R104 Repulsive Repulsive 0.0 View
B-D B-D F490 Y101 F490 Y101 Hydrophobic Hydrophobic 0.0 View
B-D B-D L452 L55 L452 L55 Hydrophobic Hydrophobic 0.0 View
B-D B-D Q493 R104 Q493 R104 Hydrophobic Hydrophobic 0.0 View
B-D B-D V483 N59 V483 N59 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L3N | 7L3N_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L3N B-D E484 R50 Attractive, Hydrogen Bonds 3.37 View
7L3N B-D E484 R50 Attractive 3.38 View
7L3N B-D E484 R50 Attractive 4.65 View
7L3N B-D E484 R50 Attractive, Hydrogen Bonds 2.56 View
7L3N_brazil_mut B-D K484 Y100 Hydrogen Bonds 3.10 View
7L3N_brazil_mut B-D K484 Y101 Hydrophobic 4.40 View
7L3N_brazil_mut B-D K484 Y101 Hydrophobic 4.21 View
7L3N_brazil_mut B-D K484 Y110 Hydrophobic 4.38 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph