VTR

23 main matches found (36 matches in total )

Execution time: 5.0 seconds

Match RMSD = 0.01

VTR = 0.0

Average AVD = 0.01 Å

Parameters

Chains(7KN5.pdb ): B versus F

Chains(7KN5_brazil_mut.pdb ) B versus F

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KN5 834 13 8 16 0 0 1 38
B7KN5_brazil_mut 833 13 8 16 0 0 1 38

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-F B-F A372 Y100 A372 Y100 Hydrophobic Hydrophobic 0.01 View
B-F B-F Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.01 View
B-F B-F S375 Q95 S375 Q95 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.01 View
B-F B-F K378 E101 K378 E101 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.01 View
B-F B-F K378 E101 K378 E101 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.01 View
B-F B-F R408 E101 R408 E101 Attractive Attractive 0.0 View
B-F B-F F374 S98 F374 S98 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F S371 S98 S371 S98 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F S371 Y100 S371 Y100 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F S371 Y99 S371 Y99 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F R408 E101 R408 E101 Attractive Attractive 0.0 View
B-F B-F Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.01 View
B-F B-F P384 Y31 P384 Y31 Hydrophobic Hydrophobic 0.01 View
B-F B-F L368 S98 L368 S98 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.01 View
B-F B-F Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.01 View
B-F B-F Y369 S98 Y369 S98 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.01 View
B-F B-F S371 S98 S371 S98 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.01 View
B-F B-F F377 S96 F377 S96 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F Y369 Y99 Y369 Y99 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F R408 E101 R408 E101 Attractive Attractive 0.0 View
B-F B-F Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.01 View
B-F B-F R408 E101 R408 E101 Attractive Attractive 0.0 View
B-F B-F R408 E101 R408 E101 Attractive Attractive 0.0 View
B-F B-F P384 Y31 P384 Y31 Hydrophobic Hydrophobic 0.01 View
B-F B-F R408 E101 R408 E101 Attractive Attractive 0.0 View
B-F B-F Y369 Y99 Y369 Y99 Aromatic Stacking Aromatic Stacking 0.01 View
B-F B-F T376 Q95 T376 Q95 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.01 View
B-F B-F S371 S98 S371 S98 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F S383 Y31 S383 Y31 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F F377 S96 F377 S96 Hydrogen Bonds Hydrogen Bonds 0.01 View
B-F B-F N370 Y100 N370 Y100 Hydrophobic Hydrophobic 0.01 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KN5 | 7KN5_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph