VTR

9 main matches found (31 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.15

VTR = 0.0

Average AVD = 0.06 Å

Parameters

Chains(7KMG.pdb ): C versus B

Chains(7KMG_brazil_mut.pdb ) C versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KMG 1255 22 6 4 0 0 2 34
B7KMG_brazil_mut 1255 22 0 3 0 4 2 31

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y32 F486 Y32 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Aromatic Stacking Aromatic Stacking 0.0 View
B-C B-C Y32 Y489 Y32 Y489 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-C B-C T94 V483 T94 V483 Hydrophobic Hydrophobic 0.0 View
B-C B-C T94 N481 T94 N481 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y32 F486 Y32 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y32 F486 Y32 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y32 F486 Y32 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C R96 E484 R96 K484 Attractive Repulsive 0.43 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C R96 E484 R96 K484 Attractive Repulsive 0.43 View
B-C B-C T94 V483 T94 V483 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y32 F486 Y32 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C R96 E484 R96 K484 Hydrogen Bonds Hydrogen Bonds 0.07 View
B-C B-C Y32 F486 Y32 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.0 View
B-C B-C R96 E484 R96 K484 Attractive Repulsive 0.43 View
B-C B-C Y32 F486 Y32 F486 Aromatic Stacking Aromatic Stacking 0.0 View
B-C B-C R96 E484 R96 K484 Attractive Hydrogen Bonds Repulsive 0.43 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KMG | 7KMG_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KMG B-C R96 E484 Attractive 5.71 View
7KMG B-C R96 E484 Attractive 4.64 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph