VTR

2 main matches found (30 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.01

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7KLH.pdb ): B versus I

Chains(7KLH_brazil_mut.pdb ) B versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KLH 1269 28 0 2 0 0 1 31
B7KLH_brazil_mut 1269 30 0 1 0 0 1 32

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
I-B I-B Y109 Y489 Y109 Y489 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 F486 Y110 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y109 Y489 Y109 Y489 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 F486 Y110 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B F113 Q493 F113 Q493 Hydrophobic Hydrophobic 0.0 View
I-B I-B A66 F486 A66 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 F486 Y110 F486 Aromatic Stacking Aromatic Stacking 0.0 View
I-B I-B F113 L455 F113 L455 Hydrophobic Hydrophobic 0.0 View
I-B I-B A66 F486 A66 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 F486 Y110 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B F113 L455 F113 L455 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y109 Y489 Y109 Y489 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 F486 Y110 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 F486 Y110 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y109 F490 Y109 F490 Hydrogen Bonds Hydrogen Bonds 0.0 View
I-B I-B A66 F486 A66 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B F113 Q493 F113 Q493 Hydrophobic Hydrophobic 0.0 View
I-B I-B A66 F486 A66 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 Y489 Y110 Y489 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 F486 Y110 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 F486 Y110 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 Y489 Y110 Y489 Hydrophobic Hydrophobic 0.0 View
I-B I-B F113 L455 F113 L455 Hydrophobic Hydrophobic 0.0 View
I-B I-B A64 F486 A64 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 E484 Y110 K484 Hydrophobic Hydrophobic 0.05 View
I-B I-B Y109 Y489 Y109 Y489 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y110 F486 Y110 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B Y109 Y489 Y109 Y489 Hydrophobic Hydrophobic 0.0 View
I-B I-B A66 F486 A66 F486 Hydrophobic Hydrophobic 0.0 View
I-B I-B A66 F486 A66 F486 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KLH | 7KLH_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KLH I-B Y109 E484 Hydrogen Bonds 2.71 View
7KLH_brazil_mut I-B Y110 K484 Hydrophobic 4.34 View
7KLH_brazil_mut I-B Y110 K484 Hydrophobic 4.18 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph