VTR

23 main matches found (56 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.04

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7K8M.pdb ): E versus A

Chains(7K8M_brazil_mut.pdb ) E versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8M 607 33 2 21 0 0 4 60
B7K8M_brazil_mut 606 33 0 19 0 0 4 56

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-E A-E S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y52 K417 Y52 T417 Hydrophobic Hydrophobic 0.26 View
A-E A-E R94 N487 R94 N487 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E S53 Y473 S53 Y473 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y102 F486 Y102 F486 Aromatic Stacking Aromatic Stacking 0.0 View
A-E A-E Y96 F456 Y96 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y99 L455 Y99 L455 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y33 L455 Y33 L455 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y96 F456 Y96 F456 Aromatic Stacking Aromatic Stacking 0.0 View
A-E A-E Y96 Y489 Y96 Y489 Aromatic Stacking Aromatic Stacking 0.0 View
A-E A-E Y96 F456 Y96 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E G26 S477 G26 S477 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y96 Y489 Y96 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E S31 Y473 S31 Y473 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E S30 K458 S30 K458 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y96 Y489 Y96 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y33 F456 Y33 F456 Aromatic Stacking Aromatic Stacking 0.0 View
A-E A-E Y96 F456 Y96 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y96 Y489 Y96 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E G26 S477 G26 S477 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y96 Y489 Y96 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y96 Y489 Y96 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y96 Y489 Y96 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y96 F456 Y96 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y99 Y453 Y99 Y453 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y96 Y489 Y96 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y96 F456 Y96 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E R94 Y489 R94 Y489 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y96 F456 Y96 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E G54 Y421 G54 Y421 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y96 L455 Y96 L455 Hydrophobic Hydrophobic 0.0 View
A-E A-E S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y102 F486 Y102 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y96 F456 Y96 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E G26 N487 G26 N487 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E N32 A475 N32 A475 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E S53 R457 S53 R457 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y96 F456 Y96 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E F27 F486 F27 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E I28 A475 I28 A475 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E S31 K458 S31 K458 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y96 Y489 Y96 Y489 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8M | 7K8M_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8M A-E G97 K417 Hydrogen Bonds 2.61 View
7K8M A-E D98 K417 Attractive 5.98 View
7K8M A-E D98 K417 Attractive 4.60 View
7K8M A-E Y99 K417 Hydrogen Bonds 3.43 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph