VTR

28 main matches found (74 matches in total )

Execution time: 87.0 seconds

Match RMSD = 0.31

VTR = 0.0

Average AVD = 0.08 Å

Parameters

Chains(7JWB.pdb ): A versus D

Chains(7JWB_brazil_mut.pdb ) A versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JWB 3289 46 7 24 0 0 5 82
B7JWB_brazil_mut 3289 53 0 23 0 1 6 83

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-A D-A Y33 Y505 Y33 Y505 Aromatic Stacking Aromatic Stacking 0.0 View
D-A D-A S56 G496 S56 G496 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A L114 F486 L114 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.0 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y35 Y489 Y35 Y489 Aromatic Stacking Aromatic Stacking 0.0 View
D-A D-A F103 K417 F103 T417 Hydrophobic Hydrophobic 1.12 View
D-A D-A S57 S494 S57 S494 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y54 Y489 Y54 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A V39 F486 V39 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y54 Y489 Y54 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y33 Y505 Y33 Y505 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y35 Y453 Y35 Y453 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A E47 F486 E47 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A S31 Y505 S31 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A Y59 S494 Y59 S494 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A V39 F486 V39 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y35 Y489 Y35 Y489 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y33 Y505 Y33 Y505 Hydrophobic Hydrophobic 0.0 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y33 Y505 Y33 Y505 Hydrophobic Hydrophobic 0.0 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.0 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.0 View
D-A D-A W101 Y489 W101 Y489 Aromatic Stacking Aromatic Stacking 0.0 View
D-A D-A Y33 K417 Y33 E406 Hydrogen Bonds Hydrogen Bonds 1.61 View
D-A D-A Y30 N501 Y30 Y501 Hydrogen Bonds Hydrophobic 1.35 View
D-A D-A Y30 Q498 Y30 Q498 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A F103 K417 F103 T417 Hydrophobic Hydrophobic 1.12 View
D-A D-A G110 Y421 G110 Y421 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A L114 N487 L114 N487 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A A104 L455 A104 L455 Hydrophobic Hydrophobic 0.0 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y35 Y489 Y35 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.0 View
D-A D-A R52 C488 R52 C488 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A W101 F456 W101 F456 Hydrophobic Hydrophobic 0.0 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y33 R403 Y33 R403 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A Y54 Y489 Y54 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y33 Y505 Y33 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A V39 F486 V39 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A S57 Y453 S57 Y453 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y61 Q493 Y61 Q493 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A L114 F486 L114 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y35 Y489 Y35 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y61 Q493 Y61 Q493 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A V39 F486 V39 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A W101 F456 W101 F456 Hydrophobic Hydrophobic 0.0 View
D-A D-A S111 Y473 S111 Y473 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A Y30 G496 Y30 G496 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A S56 R403 S56 R403 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A G110 R457 G110 R457 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.0 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y35 L455 Y35 L455 Hydrophobic Hydrophobic 0.0 View
D-A D-A Y30 N501 Y30 Y501 Hydrogen Bonds Hydrogen Bonds 0.6 View
D-A D-A Y54 Y489 Y54 Y489 Aromatic Stacking Aromatic Stacking 0.0 View
D-A D-A R52 C488 R52 C488 Hydrogen Bonds Hydrogen Bonds 0.0 View
D-A D-A E47 F486 E47 F486 Hydrophobic Hydrophobic 0.0 View
D-A D-A W101 F456 W101 F456 Aromatic Stacking Aromatic Stacking 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JWB | 7JWB_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JWB D-A R52 E484 Attractive 5.14 View
7JWB D-A R52 E484 Attractive 4.63 View
7JWB D-A R52 E484 Attractive 5.42 View
7JWB D-A R52 E484 Attractive 5.52 View
7JWB D-A R52 E484 Attractive 5.90 View
7JWB D-A R52 E484 Attractive, Hydrogen Bonds 3.54 View
7JWB D-A R52 E484 Attractive 4.49 View
7JWB_brazil_mut D-A Y30 Y501 Aromatic Stacking 5.46 View
7JWB_brazil_mut D-A Y30 Y501 Hydrophobic 4.38 View
7JWB_brazil_mut D-A Y30 Y501 Hydrophobic 4.00 View
7JWB_brazil_mut D-A Y30 Y501 Hydrophobic 3.60 View
7JWB_brazil_mut D-A Y30 Y501 Hydrophobic 4.09 View
7JWB_brazil_mut D-A Y61 K484 Hydrophobic 4.16 View
7JWB_brazil_mut D-A Y61 K484 Hydrophobic 4.10 View
7JWB_brazil_mut D-A K67 K484 Repulsive 4.63 View
7JWB_brazil_mut D-A A104 T417 Hydrogen Bonds 3.44 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph