VTR

7 main matches found (18 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.31

VTR = 0.0

Average AVD = 0.11 Å

Parameters

Chains(7JMP.pdb ): A versus H

Chains(7JMP_brazil_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JMP 579 11 0 12 0 0 1 24
B7JMP_brazil_mut 577 12 0 6 0 0 1 19

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H Y449 N73 Y449 N73 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y449 N73 Y449 N73 Hydrophobic Hydrophobic 0.0 View
A-H A-H Q493 S30 Q493 S30 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H E484 Y58 K484 Y58 Hydrogen Bonds Hydrogen Bonds 0.15 View
A-H A-H Y489 Y33 Y489 Y33 Aromatic Stacking Aromatic Stacking 0.0 View
A-H A-H Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.0 View
A-H A-H E484 Y52 K484 Y52 Hydrophobic Hydrophobic 0.24 View
A-H A-H Y449 N73 Y449 N73 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y449 N73 Y449 N73 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H F486 Y52 F486 Y52 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H E484 T53 K484 T53 Hydrogen Bonds Hydrogen Bonds 1.25 View
A-H A-H Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y449 S74 Y449 S74 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-H A-H E484 Y52 K484 Y52 Hydrophobic Hydrophobic 0.24 View
A-H A-H Y489 Y52 Y489 Y52 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y489 Y33 Y489 Y33 Hydrophobic Hydrophobic 0.0 View
A-H A-H Y489 Y52 Y489 Y52 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JMP | 7JMP_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JMP A-H E484 T53 Hydrogen Bonds 3.42 View
7JMP A-H E484 G54 Hydrogen Bonds 2.84 View
7JMP A-H E484 G54 Hydrogen Bonds 3.46 View
7JMP A-H E484 G55 Hydrogen Bonds 3.66 View
7JMP A-H E484 T56 Hydrogen Bonds 3.38 View
7JMP A-H E484 T56 Hydrogen Bonds 2.69 View
7JMP_brazil_mut A-H K484 Y52 Hydrophobic 3.91 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph