VTR

11 main matches found (17 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.49

VTR = 0.0

Average AVD = 0.12 Å

Parameters

Chains(7JMO.pdb ): A versus L

Chains(7JMO_brazil_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JMO 616 6 0 10 0 0 1 17
B7JMO_brazil_mut 616 6 0 13 0 0 1 20

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y505 S93 Y505 S93 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L R403 G92 R403 G92 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L Y505 V28 Y505 V28 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y453 Y32 Y453 Y32 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L R403 Y32 R403 Y32 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L R403 S93 R403 S93 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y495 S31 Y495 S31 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L G496 S29 G496 S29 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L Y505 V28 Y505 V28 Hydrophobic Hydrophobic 0.0 View
A-L A-L R403 G92 R403 G92 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L N501 S29 Y501 S29 Hydrogen Bonds Hydrogen Bonds 2.0 View
A-L A-L Y505 S93 Y505 S93 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y505 Y32 Y505 Y32 Aromatic Stacking Aromatic Stacking 0.0 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JMO | 7JMO_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JMO_brazil_mut A-L Y501 S30 Hydrogen Bonds 3.04 View
7JMO_brazil_mut A-L Y501 S30 Hydrogen Bonds 3.67 View
7JMO_brazil_mut A-L Y501 G68 Hydrogen Bonds 3.47 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph