VTR

19 main matches found (59 matches in total )

Execution time: 34.0 seconds

Match RMSD = 0.22

VTR = 0.0

Average AVD = 0.03 Å

Parameters

Chains(7DX4.pdb ): E versus A

Chains(7DX4_brazil_mut.pdb ) E versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7DX4 1027 40 3 18 0 2 1 64
B7DX4_brazil_mut 1027 46 2 16 0 3 1 68

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-E A-E K31 F456 K31 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 F456 K31 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y41 T500 Y41 T500 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E T27 A475 T27 A475 Hydrophobic Hydrophobic 0.0 View
A-E A-E S19 A475 S19 A475 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E T27 Y489 T27 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E T27 Y473 T27 Y473 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 F456 K31 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
A-E A-E Q24 N487 Q24 N487 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y83 F486 Y83 F486 Aromatic Stacking Aromatic Stacking 0.0 View
A-E A-E M82 F486 M82 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E G354 G502 G354 G502 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E T27 F456 T27 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E T27 F456 T27 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E D355 T500 D355 T500 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
A-E A-E K353 G496 K353 G496 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E R393 Y505 R393 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y83 N487 Y83 N487 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y41 Q498 Y41 Q498 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y41 T500 Y41 T500 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E H34 E406 H34 E406 Attractive Attractive 0.0 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
A-E A-E T27 Y489 T27 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 F456 K31 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E R357 T500 R357 T500 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E T27 F456 T27 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E M82 F486 M82 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y41 Q498 Y41 Q498 Hydrophobic Hydrophobic 0.0 View
A-E A-E K353 G502 K353 G502 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y41 N501 Y41 Y501 Hydrogen Bonds Hydrogen Bonds 0.02 View
A-E A-E L45 Q498 L45 Q498 Hydrophobic Hydrophobic 0.0 View
A-E A-E M82 F486 M82 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E M82 F486 M82 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E T27 Y473 T27 Y473 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 L455 K31 L455 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E H34 L455 H34 L455 Hydrophobic Hydrophobic 0.0 View
A-E A-E K31 F456 K31 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y41 Q498 Y41 Q498 Hydrophobic Hydrophobic 0.0 View
A-E A-E H34 R403 H34 R403 Repulsive Repulsive 0.0 View
A-E A-E Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E H34 R403 H34 R403 Repulsive Repulsive 0.0 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.0 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.0 View
A-E A-E D30 F456 D30 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E Y41 N501 Y41 Q498 Hydrogen Bonds Hydrogen Bonds 1.7 View
A-E A-E Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.0 View
A-E A-E D38 Y449 D38 Y449 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E D30 F456 D30 F456 Hydrophobic Hydrophobic 0.0 View
A-E A-E D38 Y449 D38 Y449 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7DX4 | 7DX4_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7DX4 A-E D30 K417 Attractive, Hydrogen Bonds 3.51 View
7DX4 A-E D30 K417 Attractive, Hydrogen Bonds 2.34 View
7DX4 A-E E35 Q493 Hydrogen Bonds 3.69 View
7DX4_brazil_mut A-E K31 K484 Repulsive 4.79 View
7DX4_brazil_mut A-E E35 K484 Attractive 5.64 View
7DX4_brazil_mut A-E K353 Y501 Hydrophobic 3.59 View
7DX4_brazil_mut A-E K353 Y501 Hydrophobic 3.33 View
7DX4_brazil_mut A-E K353 Y501 Hydrophobic 4.29 View
7DX4_brazil_mut A-E K353 Y501 Hydrophobic 3.54 View
7DX4_brazil_mut A-E K353 Y501 Hydrophobic 4.04 View
7DX4_brazil_mut A-E K353 Y501 Hydrophobic 3.10 View
7DX4_brazil_mut A-E K353 Y501 Hydrogen Bonds 3.29 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph