VTR

20 main matches found (57 matches in total )

Execution time: 8.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7D4G.pdb ): B versus N

Chains(7D4G_brazil_mut.pdb ) B versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7D4G 502 37 10 9 0 0 2 58
B7D4G_brazil_mut 502 37 10 9 0 0 2 58

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-N B-N R246 Y28 R246 Y28 Hydrophobic Hydrophobic 0.0 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.0 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 P102 Y248 P102 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y144 T29 Y144 T29 Hydrophobic Hydrophobic 0.0 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 F103 Y248 F103 Aromatic Stacking Aromatic Stacking 0.0 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.0 View
B-N B-N Y248 Y28 Y248 Y28 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 Y28 Y248 Y28 Hydrophobic Hydrophobic 0.0 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N R246 Y28 R246 Y28 Hydrophobic Hydrophobic 0.0 View
B-N B-N S247 Y28 S247 Y28 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-N B-N Y145 E32 Y145 E32 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-N B-N K147 P31 K147 P31 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 T101 Y248 T101 Hydrophobic Hydrophobic 0.0 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.0 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N K150 P54 K150 P54 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-N B-N Y248 P102 Y248 P102 Hydrophobic Hydrophobic 0.0 View
B-N B-N R246 G27 R246 G27 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.0 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.0 View
B-N B-N Y145 P102 Y145 P102 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 E32 Y248 E32 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 Y28 Y248 Y28 Hydrophobic Hydrophobic 0.0 View
B-N B-N K147 V33 K147 V33 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-N B-N Y248 V33 Y248 V33 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 T101 Y248 T101 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y145 P102 Y145 P102 Hydrophobic Hydrophobic 0.0 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N R246 E32 R246 E32 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
B-N B-N Y248 E32 Y248 E32 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-N B-N Y144 E32 Y144 E32 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 P102 Y248 P102 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y144 T29 Y144 T29 Hydrophobic Hydrophobic 0.0 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.0 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 V33 Y248 V33 Hydrophobic Hydrophobic 0.0 View
B-N B-N Y248 Y28 Y248 Y28 Hydrophobic Hydrophobic 0.0 View
B-N B-N K147 P31 K147 P31 Hydrogen Bonds Hydrogen Bonds 0.0 View
B-N B-N Y248 Y28 Y248 Y28 Aromatic Stacking Aromatic Stacking 0.0 View
B-N B-N K147 E73 K147 E73 Attractive Attractive 0.0 View
B-N B-N K147 P31 K147 P31 Hydrophobic Hydrophobic 0.0 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.0 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.0 View
B-N B-N K147 E73 K147 E73 Attractive Attractive 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7D4G | 7D4G_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph