VTR

17 main matches found (22 matches in total )

Execution time: 47.0 seconds

Match RMSD = 0.33

VTR = 0.0

Average AVD = 0.07 Å

Parameters

Chains(7D0C.pdb ): C versus G

Chains(7D0C_brazil_mut.pdb ) C versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7D0C 3860 7 0 17 0 0 1 25
B7D0C_brazil_mut 3860 5 0 16 0 0 1 22

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-G C-G Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G T415 Y58 T415 Y58 Hydrophobic Hydrophobic 0.0 View
C-G C-G F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.0 View
C-G C-G N487 E1 N487 E1 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G F456 Y99 F456 Y99 Hydrophobic Hydrophobic 0.0 View
C-G C-G D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.0 View
C-G C-G K417 Y52 T417 Y52 Hydrophobic Hydrogen Bonds 1.56 View
C-G C-G G416 Y58 G416 Y58 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G S477 T28 S477 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G A475 F27 A475 F27 Hydrophobic Hydrophobic 0.0 View
C-G C-G L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G A475 F27 A475 F27 Hydrophobic Hydrophobic 0.0 View
C-G C-G G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G K458 S30 K458 S30 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G Q474 S31 Q474 S31 Hydrogen Bonds Hydrogen Bonds 0.0 View
C-G C-G T415 S56 T415 S56 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7D0C | 7D0C_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7D0C C-G K417 Y33 Hydrogen Bonds 3.59 View
7D0C C-G K417 G100 Hydrogen Bonds 3.74 View
7D0C C-G K417 F102 Hydrophobic 3.80 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph