VTR

5 main matches found (9 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.57

VTR = 0.01

Average AVD = 0.19 Å

Parameters

Chains(7CH5.pdb ): R versus L

Chains(7CH5_brazil_mut.pdb ) R versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CH5 607 4 0 5 0 0 1 10
B7CH5_brazil_mut 607 4 0 5 0 0 1 10

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-R L-R S30 N501 S30 Y501 Hydrogen Bonds Hydrogen Bonds 1.7 View
L-R L-R F32 Y505 F32 Y505 Hydrophobic Hydrophobic 0.0 View
L-R L-R F32 Y505 F32 Y505 Hydrophobic Hydrophobic 0.0 View
L-R L-R V29 Y505 V29 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-R L-R F32 Y505 F32 Y505 Hydrophobic Hydrophobic 0.0 View
L-R L-R G28 Y505 G28 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-R L-R F32 Y505 F32 Y505 Hydrophobic Hydrophobic 0.0 View
L-R L-R F32 Y505 F32 Y505 Aromatic Stacking Aromatic Stacking 0.0 View
L-R L-R G92 R403 G92 R403 Hydrogen Bonds Hydrogen Bonds 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CH5 | 7CH5_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CH5 L-R S30 N501 Hydrogen Bonds 3.79 View
7CH5_brazil_mut L-R S67 Y501 Hydrogen Bonds 3.42 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph