VTR

26 main matches found (41 matches in total )

Execution time: 29.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7CAK.pdb ): A versus E

Chains(7CAK_brazil_mut.pdb ) A versus E

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CAK 3771 15 8 18 0 2 0 43
B7CAK_brazil_mut 3771 15 8 18 0 2 0 43

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-E A-E R408 D102 R408 D102 Attractive Attractive 0.0 View
A-E A-E D405 Y104 D405 Y104 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E R408 D102 R408 D102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
A-E A-E T376 Y50 T376 Y50 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E R408 D102 R408 D102 Attractive Attractive 0.0 View
A-E A-E P384 L62 P384 L62 Hydrophobic Hydrophobic 0.0 View
A-E A-E K378 T58 K378 T58 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E K378 G56 K378 G56 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E R408 D102 R408 D102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.0 View
A-E A-E K378 Y50 K378 Y50 Hydrophobic Hydrophobic 0.0 View
A-E A-E F377 S59 F377 S59 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E D405 D102 D405 D102 Repulsive Repulsive 0.0 View
A-E A-E Q414 Y101 Q414 Y101 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E K378 Y50 K378 Y50 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E R408 D102 R408 D102 Attractive Attractive 0.0 View
A-E A-E T376 Y105 T376 Y105 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Q414 Y101 Q414 Y101 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E R408 D102 R408 D102 Attractive Attractive 0.0 View
A-E A-E S383 T69 S383 T69 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E F377 Y50 F377 Y50 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E Y365 L62 Y365 L62 Hydrophobic Hydrophobic 0.0 View
A-E A-E T385 K65 T385 K65 Hydrophobic Hydrophobic 0.0 View
A-E A-E T385 K65 T385 K65 Hydrophobic Hydrophobic 0.0 View
A-E A-E P384 L62 P384 L62 Hydrophobic Hydrophobic 0.0 View
A-E A-E R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.0 View
A-E A-E T385 L62 T385 L62 Hydrophobic Hydrophobic 0.0 View
A-E A-E R408 D102 R408 D102 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E D405 D102 D405 D102 Repulsive Repulsive 0.0 View
A-E A-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.0 View
A-E A-E P384 D60 P384 D60 Hydrophobic Hydrophobic 0.0 View
A-E A-E K378 T58 K378 T58 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E R408 D102 R408 D102 Attractive Attractive 0.0 View
A-E A-E D405 Y104 D405 Y104 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E D405 P103 D405 P103 Hydrophobic Hydrophobic 0.0 View
A-E A-E R408 D102 R408 D102 Attractive Attractive 0.0 View
A-E A-E R408 D102 R408 D102 Hydrophobic Hydrophobic 0.0 View
A-E A-E R408 Y101 R408 Y101 Hydrophobic Hydrophobic 0.0 View
A-E A-E P384 D60 P384 D60 Hydrophobic Hydrophobic 0.0 View
A-E A-E F377 Y50 F377 Y50 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E T385 K65 T385 K65 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-E A-E R408 D102 R408 D102 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CAK | 7CAK_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph