VTR

19 main matches found (32 matches in total )

Execution time: 7.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(7BEM.pdb ): E versus L

Chains(7BEM_brazil_mut.pdb ) E versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7BEM 413 13 0 20 0 0 1 34
B7BEM_brazil_mut 413 13 0 22 0 0 1 36

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-E L-E S67 Q498 S67 Q498 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E S30 G496 S30 G496 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E N92 Y453 N92 Y453 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E N92 R403 N92 R403 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.0 View
L-E L-E N92 R403 N92 R403 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E G28 T500 G28 T500 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.0 View
L-E L-E I2 Y505 I2 Y505 Hydrophobic Hydrophobic 0.0 View
L-E L-E Y32 Y505 Y32 Y505 Aromatic Stacking Aromatic Stacking 0.0 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.0 View
L-E L-E S93 Y505 S93 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E L91 Y505 L91 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E N92 R403 N92 R403 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E N92 Y505 N92 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E Y94 D405 Y94 D405 Hydrophobic Hydrophobic 0.0 View
L-E L-E Y94 E406 Y94 E406 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.0 View
L-E L-E Y32 Y495 Y32 Y495 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E Y94 E406 Y94 E406 Hydrophobic Hydrophobic 0.0 View
L-E L-E G28 G502 G28 G502 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.0 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.0 View
L-E L-E S67 Q498 S67 Q498 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.0 View
L-E L-E Y94 Q409 Y94 Q409 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E I2 Y505 I2 Y505 Hydrophobic Hydrophobic 0.0 View
L-E L-E Y32 S494 Y32 S494 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E Y94 E406 Y94 E406 Hydrophobic Hydrophobic 0.0 View
L-E L-E S30 Q498 S30 Q498 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E Q90 Y505 Q90 Y505 Hydrogen Bonds Hydrogen Bonds 0.0 View
L-E L-E Y94 D405 Y94 D405 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7BEM | 7BEM_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7BEM L-E S30 N501 Hydrogen Bonds 3.29 View
7BEM L-E N92 K417 Hydrogen Bonds 2.97 View
7BEM_brazil_mut L-E S30 Y501 Hydrogen Bonds 3.79 View
7BEM_brazil_mut L-E S67 Y501 Hydrogen Bonds 3.78 View
7BEM_brazil_mut L-E S67 Y501 Hydrogen Bonds 3.68 View
7BEM_brazil_mut L-E G68 Y501 Hydrogen Bonds 3.02 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph