VTR

12 main matches found (32 matches in total )

Execution time: 8.0 seconds

Match RMSD = 0.0

VTR = 0.0

Average AVD = 0.0 Å

Parameters

Chains(6XKQ.pdb ): A versus L

Chains(6XKQ_brazil_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XKQ 569 20 0 9 0 0 3 32
B6XKQ_brazil_mut 569 20 0 11 0 0 3 34

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L L455 Y30 L455 Y30 Hydrophobic Hydrophobic 0.0 View
A-L A-L F456 F32 F456 F32 Hydrophobic Hydrophobic 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y489 F32 Y489 F32 Hydrophobic Hydrophobic 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrophobic Hydrophobic 0.0 View
A-L A-L Q498 N69 Q498 N69 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L L455 F32 L455 F32 Hydrophobic Hydrophobic 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrophobic Hydrophobic 0.0 View
A-L A-L Q493 H31 Q493 H31 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L F486 Y49 F486 Y49 Aromatic Stacking Aromatic Stacking 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y449 H31 Y449 H31 Aromatic Stacking Aromatic Stacking 0.0 View
A-L A-L F486 V46 F486 V46 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y489 F32 Y489 F32 Hydrophobic Hydrophobic 0.0 View
A-L A-L Q498 N69 Q498 N69 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrophobic Hydrophobic 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrophobic Hydrophobic 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrophobic Hydrophobic 0.0 View
A-L A-L F456 F32 F456 F32 Hydrophobic Hydrophobic 0.0 View
A-L A-L Q493 A29 Q493 A29 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L G446 G68 G446 G68 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L Q493 H31 Q493 H31 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrophobic Hydrophobic 0.0 View
A-L A-L G446 S67 G446 S67 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L F486 Y49 F486 Y49 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y489 F32 Y489 F32 Aromatic Stacking Aromatic Stacking 0.0 View
A-L A-L L455 F32 L455 F32 Hydrophobic Hydrophobic 0.0 View
A-L A-L Y449 G68 Y449 G68 Hydrogen Bonds Hydrogen Bonds 0.0 View
A-L A-L F486 V46 F486 V46 Hydrophobic Hydrophobic 0.0 View
A-L A-L F456 F32 F456 F32 Hydrophobic Hydrophobic 0.0 View
A-L A-L F486 V46 F486 V46 Hydrophobic Hydrophobic 0.0 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XKQ | 6XKQ_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XKQ_brazil_mut A-L Y501 G28 Hydrogen Bonds 3.76 View
6XKQ_brazil_mut A-L Y501 N69 Hydrogen Bonds 3.32 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph