VTR

26 main matches found (48 matches in total )

Execution time: 16.0 seconds

Match RMSD = 0.01

VTR = 0.0

Average AVD = 0.01 Å

Parameters

Chains(6XCM.pdb ): C versus H

Chains(6XCM_brazil_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XCM 3368 22 4 21 0 0 2 49
B6XCM_brazil_mut 3367 22 3 21 0 0 2 48

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H G416 Y58 G416 Y58 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H K458 G54 K458 G54 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H G476 K75 G476 K75 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H R403 E99 R403 E99 Attractive Attractive 0.01 View
C-H C-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H R403 E99 R403 E99 Attractive Attractive 0.01 View
C-H C-H T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 0.01 View
C-H C-H Q474 S31 Q474 S31 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 0.01 View
C-H C-H Y473 N32 Y473 N32 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H Y505 W98 Y505 W98 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 0.01 View
C-H C-H F486 Y102 F486 Y102 Hydrophobic Hydrophobic 0.01 View
C-H C-H Y421 Y33 Y421 Y33 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 0.01 View
C-H C-H R403 E99 R403 E99 Attractive Attractive 0.01 View
C-H C-H G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H R457 Y33 R457 Y33 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H R457 Y33 R457 Y33 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H Q474 S31 Q474 S31 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H Y473 Y33 Y473 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H K458 S53 K458 S53 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H N487 F27 N487 F27 Hydrophobic Hydrophobic 0.01 View
C-H C-H Y505 E99 Y505 E99 Hydrogen Bonds Hydrogen Bonds 0.01 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 0.01 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.01 View
C-H C-H F486 Y102 F486 Y102 Aromatic Stacking Aromatic Stacking 0.01 View
C-H C-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.01 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XCM | 6XCM_brazil_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XCM C-H K417 E99 Attractive 5.67 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph